Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3223

Experiment: Chloramphenicol 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3222 and Shewana3_3223 are separated by 396 nucleotidesShewana3_3223 and Shewana3_3224 are separated by 105 nucleotidesShewana3_3224 and Shewana3_3225 are separated by 86 nucleotides Shewana3_3222: Shewana3_3222 - hypothetical protein (RefSeq), at 3,864,842 to 3,865,276 _3222 Shewana3_3223: Shewana3_3223 - hypothetical protein (RefSeq), at 3,865,673 to 3,865,987 _3223 Shewana3_3224: Shewana3_3224 - lysine exporter protein LysE/YggA (RefSeq), at 3,866,093 to 3,866,707 _3224 Shewana3_3225: Shewana3_3225 - peptidase S10, serine carboxypeptidase (RefSeq), at 3,866,794 to 3,868,344 _3225 Position (kb) 3865 3866Strain fitness (log2 ratio) -1 0 1at 3864.749 kb on - strandat 3864.749 kb on - strandat 3864.896 kb on + strand, within Shewana3_3222at 3864.942 kb on - strand, within Shewana3_3222at 3864.975 kb on + strand, within Shewana3_3222at 3865.089 kb on + strand, within Shewana3_3222at 3865.089 kb on + strand, within Shewana3_3222at 3865.302 kb on + strandat 3865.378 kb on + strandat 3865.562 kb on + strandat 3865.597 kb on + strandat 3865.605 kb on - strandat 3865.620 kb on - strandat 3865.635 kb on - strandat 3865.743 kb on + strand, within Shewana3_3223at 3865.982 kb on + strandat 3866.023 kb on - strandat 3866.079 kb on - strandat 3866.079 kb on - strandat 3866.266 kb on - strand, within Shewana3_3224at 3866.459 kb on + strand, within Shewana3_3224at 3866.526 kb on + strand, within Shewana3_3224at 3866.628 kb on + strand, within Shewana3_3224at 3866.662 kb on - strandat 3866.683 kb on + strandat 3866.691 kb on - strandat 3866.691 kb on - strandat 3866.738 kb on + strandat 3866.771 kb on - strandat 3866.771 kb on - strandat 3866.893 kb on + strandat 3866.901 kb on - strandat 3866.908 kb on + strandat 3866.914 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloramphenicol 0.0001 mg/ml
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3,864,749 - -0.9
3,864,749 - -0.3
3,864,896 + Shewana3_3222 0.12 -0.6
3,864,942 - Shewana3_3222 0.23 -0.8
3,864,975 + Shewana3_3222 0.31 -1.5
3,865,089 + Shewana3_3222 0.57 -0.7
3,865,089 + Shewana3_3222 0.57 -1.4
3,865,302 + +1.3
3,865,378 + +0.2
3,865,562 + +0.7
3,865,597 + -0.4
3,865,605 - -1.7
3,865,620 - +0.3
3,865,635 - +0.2
3,865,743 + Shewana3_3223 0.22 +0.8
3,865,982 + +0.1
3,866,023 - -0.7
3,866,079 - +0.6
3,866,079 - +0.0
3,866,266 - Shewana3_3224 0.28 +1.1
3,866,459 + Shewana3_3224 0.60 -1.7
3,866,526 + Shewana3_3224 0.70 -0.1
3,866,628 + Shewana3_3224 0.87 +0.7
3,866,662 - -0.0
3,866,683 + +0.5
3,866,691 - +0.5
3,866,691 - +0.3
3,866,738 + +0.9
3,866,771 - -0.2
3,866,771 - +0.0
3,866,893 + +0.9
3,866,901 - -0.2
3,866,908 + +0.3
3,866,914 + +0.1

Or see this region's nucleotide sequence