Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3222

Experiment: Chloramphenicol 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3221 and Shewana3_3222 are separated by 293 nucleotidesShewana3_3222 and Shewana3_3223 are separated by 396 nucleotidesShewana3_3223 and Shewana3_3224 are separated by 105 nucleotides Shewana3_3221: Shewana3_3221 - uracil-DNA glycosylase (RefSeq), at 3,863,883 to 3,864,548 _3221 Shewana3_3222: Shewana3_3222 - hypothetical protein (RefSeq), at 3,864,842 to 3,865,276 _3222 Shewana3_3223: Shewana3_3223 - hypothetical protein (RefSeq), at 3,865,673 to 3,865,987 _3223 Shewana3_3224: Shewana3_3224 - lysine exporter protein LysE/YggA (RefSeq), at 3,866,093 to 3,866,707 _3224 Position (kb) 3864 3865 3866Strain fitness (log2 ratio) -1 0 1at 3863.974 kb on + strand, within Shewana3_3221at 3864.155 kb on - strand, within Shewana3_3221at 3864.166 kb on - strand, within Shewana3_3221at 3864.184 kb on - strand, within Shewana3_3221at 3864.189 kb on - strand, within Shewana3_3221at 3864.638 kb on - strandat 3864.749 kb on - strandat 3864.749 kb on - strandat 3864.896 kb on + strand, within Shewana3_3222at 3864.942 kb on - strand, within Shewana3_3222at 3864.975 kb on + strand, within Shewana3_3222at 3865.089 kb on + strand, within Shewana3_3222at 3865.089 kb on + strand, within Shewana3_3222at 3865.302 kb on + strandat 3865.378 kb on + strandat 3865.562 kb on + strandat 3865.597 kb on + strandat 3865.605 kb on - strandat 3865.620 kb on - strandat 3865.635 kb on - strandat 3865.743 kb on + strand, within Shewana3_3223at 3865.982 kb on + strandat 3866.023 kb on - strandat 3866.079 kb on - strandat 3866.079 kb on - strandat 3866.266 kb on - strand, within Shewana3_3224

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloramphenicol 0.0001 mg/ml
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3,863,974 + Shewana3_3221 0.14 -0.7
3,864,155 - Shewana3_3221 0.41 +0.3
3,864,166 - Shewana3_3221 0.42 +0.4
3,864,184 - Shewana3_3221 0.45 -0.4
3,864,189 - Shewana3_3221 0.46 -0.6
3,864,638 - -0.1
3,864,749 - -0.9
3,864,749 - -0.3
3,864,896 + Shewana3_3222 0.12 -0.6
3,864,942 - Shewana3_3222 0.23 -0.8
3,864,975 + Shewana3_3222 0.31 -1.5
3,865,089 + Shewana3_3222 0.57 -0.7
3,865,089 + Shewana3_3222 0.57 -1.4
3,865,302 + +1.3
3,865,378 + +0.2
3,865,562 + +0.7
3,865,597 + -0.4
3,865,605 - -1.7
3,865,620 - +0.3
3,865,635 - +0.2
3,865,743 + Shewana3_3223 0.22 +0.8
3,865,982 + +0.1
3,866,023 - -0.7
3,866,079 - +0.6
3,866,079 - +0.0
3,866,266 - Shewana3_3224 0.28 +1.1

Or see this region's nucleotide sequence