Experiment: Chloramphenicol 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3221 and Shewana3_3222 are separated by 293 nucleotides Shewana3_3222 and Shewana3_3223 are separated by 396 nucleotides Shewana3_3223 and Shewana3_3224 are separated by 105 nucleotides
Shewana3_3221: Shewana3_3221 - uracil-DNA glycosylase (RefSeq), at 3,863,883 to 3,864,548
_3221
Shewana3_3222: Shewana3_3222 - hypothetical protein (RefSeq), at 3,864,842 to 3,865,276
_3222
Shewana3_3223: Shewana3_3223 - hypothetical protein (RefSeq), at 3,865,673 to 3,865,987
_3223
Shewana3_3224: Shewana3_3224 - lysine exporter protein LysE/YggA (RefSeq), at 3,866,093 to 3,866,707
_3224
Position (kb)
3864
3865
3866 Strain fitness (log2 ratio)
-1
0
1 at 3863.974 kb on + strand, within Shewana3_3221 at 3864.155 kb on - strand, within Shewana3_3221 at 3864.166 kb on - strand, within Shewana3_3221 at 3864.184 kb on - strand, within Shewana3_3221 at 3864.189 kb on - strand, within Shewana3_3221 at 3864.638 kb on - strand at 3864.749 kb on - strand at 3864.749 kb on - strand at 3864.896 kb on + strand, within Shewana3_3222 at 3864.942 kb on - strand, within Shewana3_3222 at 3864.975 kb on + strand, within Shewana3_3222 at 3865.089 kb on + strand, within Shewana3_3222 at 3865.089 kb on + strand, within Shewana3_3222 at 3865.302 kb on + strand at 3865.378 kb on + strand at 3865.562 kb on + strand at 3865.597 kb on + strand at 3865.605 kb on - strand at 3865.620 kb on - strand at 3865.635 kb on - strand at 3865.743 kb on + strand, within Shewana3_3223 at 3865.982 kb on + strand at 3866.023 kb on - strand at 3866.079 kb on - strand at 3866.079 kb on - strand at 3866.266 kb on - strand, within Shewana3_3224
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0001 mg/ml remove 3,863,974 + Shewana3_3221 0.14 -0.7 3,864,155 - Shewana3_3221 0.41 +0.3 3,864,166 - Shewana3_3221 0.42 +0.4 3,864,184 - Shewana3_3221 0.45 -0.4 3,864,189 - Shewana3_3221 0.46 -0.6 3,864,638 - -0.1 3,864,749 - -0.9 3,864,749 - -0.3 3,864,896 + Shewana3_3222 0.12 -0.6 3,864,942 - Shewana3_3222 0.23 -0.8 3,864,975 + Shewana3_3222 0.31 -1.5 3,865,089 + Shewana3_3222 0.57 -0.7 3,865,089 + Shewana3_3222 0.57 -1.4 3,865,302 + +1.3 3,865,378 + +0.2 3,865,562 + +0.7 3,865,597 + -0.4 3,865,605 - -1.7 3,865,620 - +0.3 3,865,635 - +0.2 3,865,743 + Shewana3_3223 0.22 +0.8 3,865,982 + +0.1 3,866,023 - -0.7 3,866,079 - +0.6 3,866,079 - +0.0 3,866,266 - Shewana3_3224 0.28 +1.1
Or see this region's nucleotide sequence