Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3155
Experiment: Chloramphenicol 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Chloramphenicol 0.0001 mg/ml |
---|---|---|---|---|---|
remove | |||||
3,783,682 | + | Shewana3_3154 | 0.61 | -0.6 | |
3,783,699 | - | Shewana3_3154 | 0.62 | +0.6 | |
3,783,715 | - | Shewana3_3154 | 0.63 | +0.5 | |
3,783,727 | + | Shewana3_3154 | 0.64 | +0.2 | |
3,783,805 | + | Shewana3_3154 | 0.68 | -1.4 | |
3,783,806 | - | Shewana3_3154 | 0.68 | -0.1 | |
3,783,930 | - | Shewana3_3154 | 0.75 | -0.9 | |
3,784,151 | + | Shewana3_3154 | 0.88 | +0.1 | |
3,784,182 | + | Shewana3_3154 | 0.89 | +1.5 | |
3,784,570 | - | +0.2 | |||
3,784,570 | - | -0.7 | |||
3,784,786 | - | Shewana3_3155 | 0.33 | -2.2 | |
3,784,870 | + | Shewana3_3155 | 0.50 | -0.7 | |
3,784,875 | + | Shewana3_3155 | 0.51 | -1.5 | |
3,784,878 | - | Shewana3_3155 | 0.52 | +1.9 | |
3,785,083 | + | -0.7 | |||
3,785,083 | + | -0.4 | |||
3,785,100 | + | -1.3 | |||
3,785,175 | + | -0.3 | |||
3,785,315 | - | Shewana3_3156 | 0.18 | +1.9 | |
3,785,677 | + | Shewana3_3156 | 0.51 | -1.7 | |
3,785,797 | - | Shewana3_3156 | 0.62 | -0.9 | |
3,785,880 | - | Shewana3_3156 | 0.70 | -2.6 | |
3,786,019 | + | Shewana3_3156 | 0.82 | -0.6 | |
3,786,019 | + | Shewana3_3156 | 0.82 | -0.6 | |
3,786,027 | - | Shewana3_3156 | 0.83 | -1.4 | |
3,786,027 | - | Shewana3_3156 | 0.83 | -1.9 |
Or see this region's nucleotide sequence