Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3129

Experiment: Chloramphenicol 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Chloramphenicol 0.0001 mg/ml
3,752,149	+		Shewana3_3126	0.68	+0.2
3,752,232	+		Shewana3_3126	0.86	-0.5
3,752,252	+		Shewana3_3126	0.90	+0.9
3,752,292	-				-1.7
3,752,309	+				-0.6
3,752,321	+				-0.1
3,752,329	-				+1.9
3,752,735	-		Shewana3_3128	0.27	-1.8
3,752,765	-		Shewana3_3128	0.35	-1.1
3,752,765	-		Shewana3_3128	0.35	-1.1
3,752,773	+		Shewana3_3128	0.37	-0.9
3,752,781	-		Shewana3_3128	0.39	+0.8
3,752,883	-		Shewana3_3128	0.64	+0.9
3,752,894	+		Shewana3_3128	0.67	+0.9
3,752,902	-		Shewana3_3128	0.69	+0.1
3,752,902	-		Shewana3_3128	0.69	-2.6
3,752,902	-		Shewana3_3128	0.69	-0.5
3,752,935	+		Shewana3_3128	0.77	-0.9
3,753,009	-				+1.2
3,753,017	-				-0.1
3,753,074	-				-0.1
3,753,074	-				+0.2
3,753,075	-				+0.3
3,753,107	-				+0.4
3,753,180	-				-0.2
3,753,185	+				+0.3
3,753,202	+				-1.1
3,753,210	-				-1.4
3,753,212	+				+0.3
3,753,218	+				-0.5
3,753,218	-				-0.6
3,753,220	-				+0.9
3,753,220	-				-0.5
3,753,220	-				-0.7
3,753,283	-				-0.5
3,753,296	+				+0.9
3,753,343	+				-0.7
3,753,351	-				-0.4
3,753,425	-		Shewana3_3129	0.11	-1.0
3,753,456	+		Shewana3_3129	0.12	+1.9
3,753,460	-		Shewana3_3129	0.12	-1.7
3,753,664	+		Shewana3_3129	0.18	-1.3
3,753,762	-		Shewana3_3129	0.21	-0.2
3,753,888	+		Shewana3_3129	0.24	-0.7
3,754,060	-		Shewana3_3129	0.29	+0.2
3,754,128	-		Shewana3_3129	0.31	-0.2
3,754,128	-		Shewana3_3129	0.31	-0.5
3,754,128	-		Shewana3_3129	0.31	-0.9
3,754,128	-		Shewana3_3129	0.31	-1.0
3,754,329	-		Shewana3_3129	0.37	-0.2
3,754,354	+		Shewana3_3129	0.38	-1.0
3,754,423	+		Shewana3_3129	0.40	+0.9
3,754,442	-		Shewana3_3129	0.40	+0.1
3,754,448	+		Shewana3_3129	0.40	+0.3
3,754,530	+		Shewana3_3129	0.43	-0.5
3,754,539	-		Shewana3_3129	0.43	+0.1
3,754,586	+		Shewana3_3129	0.44	-1.4
3,754,594	-		Shewana3_3129	0.45	+0.5
3,754,594	-		Shewana3_3129	0.45	+0.6
3,754,603	-		Shewana3_3129	0.45	-0.3
3,754,605	+		Shewana3_3129	0.45	+1.9
3,754,605	+		Shewana3_3129	0.45	-1.3
3,754,605	+		Shewana3_3129	0.45	-0.1
3,754,613	-		Shewana3_3129	0.45	-0.6
3,754,613	-		Shewana3_3129	0.45	-1.6
3,754,640	+		Shewana3_3129	0.46	+0.3
3,754,649	-		Shewana3_3129	0.46	+0.2
3,754,649	-		Shewana3_3129	0.46	-1.2
3,754,651	+		Shewana3_3129	0.46	-2.2
3,754,651	+		Shewana3_3129	0.46	-0.5
3,754,712	-		Shewana3_3129	0.48	-0.3
3,754,719	-		Shewana3_3129	0.48	-0.9
3,754,719	-		Shewana3_3129	0.48	-0.2
3,754,719	-		Shewana3_3129	0.48	+0.2
3,754,758	-		Shewana3_3129	0.49	-0.2
3,754,784	+		Shewana3_3129	0.50	+1.5
3,754,792	-		Shewana3_3129	0.50	-0.1
3,754,811	-		Shewana3_3129	0.51	+1.1
3,754,834	-		Shewana3_3129	0.51	-0.9
3,754,846	-		Shewana3_3129	0.52	-0.3
3,754,889	+		Shewana3_3129	0.53	+0.9
3,754,889	+		Shewana3_3129	0.53	+1.9
3,754,897	-		Shewana3_3129	0.53	+1.5
3,754,906	+		Shewana3_3129	0.53	+0.9
3,754,907	-		Shewana3_3129	0.53	-0.2
3,754,935	+		Shewana3_3129	0.54	-1.1
3,754,936	+		Shewana3_3129	0.54	-2.1
3,754,944	-		Shewana3_3129	0.54	-0.8
3,754,954	-		Shewana3_3129	0.55	-0.7
3,755,031	+		Shewana3_3129	0.57	-0.9
3,755,036	+		Shewana3_3129	0.57	-1.3
3,755,039	-		Shewana3_3129	0.57	-0.1
3,755,095	+		Shewana3_3129	0.59	-0.7
3,755,095	+		Shewana3_3129	0.59	-1.5
3,755,095	+		Shewana3_3129	0.59	+0.3
3,755,095	+		Shewana3_3129	0.59	-0.6
3,755,140	+		Shewana3_3129	0.60	-0.9
3,755,140	-		Shewana3_3129	0.60	+0.7
3,755,189	+		Shewana3_3129	0.61	-0.5
3,755,191	+		Shewana3_3129	0.62	-0.7
3,755,191	-		Shewana3_3129	0.62	+0.7
3,755,193	-		Shewana3_3129	0.62	-1.7
3,755,199	-		Shewana3_3129	0.62	+0.3
3,755,199	-		Shewana3_3129	0.62	-1.8
3,755,221	+		Shewana3_3129	0.62	+0.9
3,755,221	+		Shewana3_3129	0.62	-0.7
3,755,221	+		Shewana3_3129	0.62	+0.9
3,755,221	+		Shewana3_3129	0.62	-0.8
3,755,221	+		Shewana3_3129	0.62	-1.1
3,755,221	+		Shewana3_3129	0.62	+0.3
3,755,221	+		Shewana3_3129	0.62	+1.9
3,755,221	+		Shewana3_3129	0.62	-0.5
3,755,221	+		Shewana3_3129	0.62	-0.1
3,755,221	+		Shewana3_3129	0.62	-0.8
3,755,221	+		Shewana3_3129	0.62	-2.1
3,755,221	+		Shewana3_3129	0.62	-0.5
3,755,221	+		Shewana3_3129	0.62	-1.5
3,755,221	+		Shewana3_3129	0.62	-0.9
3,755,221	+		Shewana3_3129	0.62	-0.5
3,755,221	+		Shewana3_3129	0.62	-0.5
3,755,229	-		Shewana3_3129	0.63	-0.4
3,755,229	-		Shewana3_3129	0.63	-0.7
3,755,229	-		Shewana3_3129	0.63	-0.5
3,755,229	-		Shewana3_3129	0.63	+0.1
3,755,229	-		Shewana3_3129	0.63	-1.1
3,755,229	-		Shewana3_3129	0.63	-0.6
3,755,230	-		Shewana3_3129	0.63	-0.8
3,755,230	-		Shewana3_3129	0.63	+0.9
3,755,230	-		Shewana3_3129	0.63	+1.9
3,755,230	-		Shewana3_3129	0.63	-0.5
3,755,230	-		Shewana3_3129	0.63	-0.0
3,755,355	+		Shewana3_3129	0.66	-1.6
3,755,356	-		Shewana3_3129	0.66	+0.9
3,755,363	-		Shewana3_3129	0.66	-0.5
3,755,377	-		Shewana3_3129	0.67	-1.1
3,755,438	+		Shewana3_3129	0.69	+1.9
3,755,438	+		Shewana3_3129	0.69	+0.5
3,755,445	-		Shewana3_3129	0.69	+1.9
3,755,451	+		Shewana3_3129	0.69	-0.4
3,755,451	+		Shewana3_3129	0.69	+1.9
3,755,451	+		Shewana3_3129	0.69	-0.1
3,755,452	+		Shewana3_3129	0.69	-0.5
3,755,473	+		Shewana3_3129	0.70	-1.2
3,755,481	+		Shewana3_3129	0.70	-1.6
3,755,489	-		Shewana3_3129	0.70	-2.3
3,755,545	+		Shewana3_3129	0.72	+0.2
3,755,551	-		Shewana3_3129	0.72	-0.2
3,755,594	-		Shewana3_3129	0.73	+1.5
3,755,596	+		Shewana3_3129	0.73	-0.1
3,755,640	+		Shewana3_3129	0.74	+0.9
3,755,640	+		Shewana3_3129	0.74	+0.3
3,755,705	+		Shewana3_3129	0.76	+0.3
3,755,743	-		Shewana3_3129	0.77	-3.0
3,755,833	-		Shewana3_3129	0.80	+1.6
3,755,914	+		Shewana3_3129	0.82	-0.5
3,755,917	+		Shewana3_3129	0.82	-0.9
3,755,917	+		Shewana3_3129	0.82	-2.9
3,755,923	-		Shewana3_3129	0.82	+1.9
3,755,924	-		Shewana3_3129	0.82	-0.7
3,756,073	-		Shewana3_3129	0.87	+0.6
3,756,073	-		Shewana3_3129	0.87	-0.2
3,756,083	-		Shewana3_3129	0.87	+0.7
3,756,085	+		Shewana3_3129	0.87	+1.9
3,756,093	-		Shewana3_3129	0.87	-1.3
3,756,146	-		Shewana3_3129	0.89	-2.0
3,756,156	+		Shewana3_3129	0.89	-1.8
3,756,164	-		Shewana3_3129	0.89	-0.3
3,756,171	-		Shewana3_3129	0.89	-1.6
3,756,264	-				-0.5
3,756,273	+				-1.1
3,756,283	-				+0.1
3,756,326	-				-0.5
3,756,395	-				+1.3
3,756,461	-				-0.8
3,757,141	+		Shewana3_3131	0.12	-0.7
3,757,275	-		Shewana3_3131	0.26	-1.2
3,757,346	+		Shewana3_3131	0.33	+0.9
3,757,354	-		Shewana3_3131	0.34	-0.4