Experiment: Chloramphenicol 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3105 and Shewana3_3106 are separated by 280 nucleotides Shewana3_3106 and Shewana3_3107 are separated by 50 nucleotides
Shewana3_3105: Shewana3_3105 - aldehyde dehydrogenase (acceptor) (RefSeq), at 3,723,574 to 3,725,070
_3105
Shewana3_3106: Shewana3_3106 - beta alanine--pyruvate transaminase (RefSeq), at 3,725,351 to 3,726,691
_3106
Shewana3_3107: Shewana3_3107 - methylmalonate-semialdehyde dehydrogenase [acylating] (RefSeq), at 3,726,742 to 3,728,232
_3107
Position (kb)
3725
3726
3727 Strain fitness (log2 ratio)
-2
-1
0
1 at 3724.424 kb on + strand, within Shewana3_3105 at 3724.424 kb on + strand, within Shewana3_3105 at 3724.514 kb on + strand, within Shewana3_3105 at 3724.599 kb on - strand, within Shewana3_3105 at 3724.871 kb on - strand, within Shewana3_3105 at 3724.871 kb on - strand, within Shewana3_3105 at 3724.997 kb on + strand at 3725.158 kb on + strand at 3725.171 kb on + strand at 3725.251 kb on - strand at 3725.317 kb on - strand at 3725.317 kb on - strand at 3725.371 kb on - strand at 3725.501 kb on + strand, within Shewana3_3106 at 3725.672 kb on - strand, within Shewana3_3106 at 3725.706 kb on - strand, within Shewana3_3106 at 3725.787 kb on + strand, within Shewana3_3106 at 3725.797 kb on + strand, within Shewana3_3106 at 3725.883 kb on + strand, within Shewana3_3106 at 3725.912 kb on - strand, within Shewana3_3106 at 3725.969 kb on + strand, within Shewana3_3106 at 3725.970 kb on + strand, within Shewana3_3106 at 3725.990 kb on + strand, within Shewana3_3106 at 3725.990 kb on + strand, within Shewana3_3106 at 3726.291 kb on + strand, within Shewana3_3106 at 3726.318 kb on + strand, within Shewana3_3106 at 3726.413 kb on - strand, within Shewana3_3106 at 3726.413 kb on - strand, within Shewana3_3106 at 3726.561 kb on + strand at 3726.561 kb on + strand at 3726.659 kb on + strand at 3726.996 kb on + strand, within Shewana3_3107 at 3727.047 kb on - strand, within Shewana3_3107 at 3727.252 kb on - strand, within Shewana3_3107 at 3727.311 kb on + strand, within Shewana3_3107 at 3727.364 kb on + strand, within Shewana3_3107 at 3727.437 kb on + strand, within Shewana3_3107 at 3727.555 kb on + strand, within Shewana3_3107 at 3727.563 kb on - strand, within Shewana3_3107 at 3727.573 kb on - strand, within Shewana3_3107
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0001 mg/ml remove 3,724,424 + Shewana3_3105 0.57 -0.5 3,724,424 + Shewana3_3105 0.57 -0.7 3,724,514 + Shewana3_3105 0.63 +0.3 3,724,599 - Shewana3_3105 0.68 +0.1 3,724,871 - Shewana3_3105 0.87 +0.0 3,724,871 - Shewana3_3105 0.87 -0.7 3,724,997 + +0.1 3,725,158 + +1.6 3,725,171 + -0.7 3,725,251 - +0.3 3,725,317 - -0.7 3,725,317 - +0.2 3,725,371 - +0.4 3,725,501 + Shewana3_3106 0.11 -0.6 3,725,672 - Shewana3_3106 0.24 +0.1 3,725,706 - Shewana3_3106 0.26 +0.7 3,725,787 + Shewana3_3106 0.33 +0.1 3,725,797 + Shewana3_3106 0.33 +0.7 3,725,883 + Shewana3_3106 0.40 +0.7 3,725,912 - Shewana3_3106 0.42 +0.1 3,725,969 + Shewana3_3106 0.46 -0.4 3,725,970 + Shewana3_3106 0.46 +0.1 3,725,990 + Shewana3_3106 0.48 +0.1 3,725,990 + Shewana3_3106 0.48 -0.0 3,726,291 + Shewana3_3106 0.70 -0.1 3,726,318 + Shewana3_3106 0.72 +1.4 3,726,413 - Shewana3_3106 0.79 -0.9 3,726,413 - Shewana3_3106 0.79 +0.2 3,726,561 + -0.1 3,726,561 + +1.2 3,726,659 + +0.3 3,726,996 + Shewana3_3107 0.17 +0.3 3,727,047 - Shewana3_3107 0.20 +0.2 3,727,252 - Shewana3_3107 0.34 -1.9 3,727,311 + Shewana3_3107 0.38 -0.2 3,727,364 + Shewana3_3107 0.42 +0.4 3,727,437 + Shewana3_3107 0.47 -0.0 3,727,555 + Shewana3_3107 0.55 +0.1 3,727,563 - Shewana3_3107 0.55 -0.2 3,727,573 - Shewana3_3107 0.56 +0.3
Or see this region's nucleotide sequence