Experiment: Chloramphenicol 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3093 and Shewana3_3094 are separated by 279 nucleotides Shewana3_3094 and Shewana3_3095 overlap by 4 nucleotides Shewana3_3095 and Shewana3_3096 overlap by 4 nucleotides
Shewana3_3093: Shewana3_3093 - FAD dependent oxidoreductase (RefSeq), at 3,710,461 to 3,711,747
_3093
Shewana3_3094: Shewana3_3094 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 3,712,027 to 3,712,842
_3094
Shewana3_3095: Shewana3_3095 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 3,712,839 to 3,713,744
_3095
Shewana3_3096: Shewana3_3096 - spermidine/putrescine ABC transporter ATPase subunit (RefSeq), at 3,713,741 to 3,714,877
_3096
Position (kb)
3712
3713 Strain fitness (log2 ratio)
-1
0
1
2 at 3711.070 kb on + strand, within Shewana3_3093 at 3711.070 kb on + strand, within Shewana3_3093 at 3711.072 kb on + strand, within Shewana3_3093 at 3711.102 kb on - strand, within Shewana3_3093 at 3711.174 kb on - strand, within Shewana3_3093 at 3711.287 kb on - strand, within Shewana3_3093 at 3711.556 kb on - strand, within Shewana3_3093 at 3711.577 kb on - strand, within Shewana3_3093 at 3711.587 kb on - strand, within Shewana3_3093 at 3711.634 kb on - strand at 3711.636 kb on - strand at 3711.637 kb on - strand at 3711.681 kb on - strand at 3711.926 kb on + strand at 3712.103 kb on + strand at 3712.154 kb on - strand, within Shewana3_3094 at 3712.247 kb on - strand, within Shewana3_3094 at 3712.393 kb on + strand, within Shewana3_3094 at 3712.460 kb on + strand, within Shewana3_3094 at 3712.513 kb on - strand, within Shewana3_3094 at 3712.565 kb on + strand, within Shewana3_3094 at 3712.626 kb on + strand, within Shewana3_3094 at 3712.634 kb on - strand, within Shewana3_3094 at 3712.930 kb on - strand, within Shewana3_3095 at 3713.012 kb on + strand, within Shewana3_3095 at 3713.012 kb on + strand, within Shewana3_3095 at 3713.012 kb on + strand, within Shewana3_3095 at 3713.012 kb on + strand, within Shewana3_3095 at 3713.062 kb on - strand, within Shewana3_3095 at 3713.062 kb on - strand, within Shewana3_3095 at 3713.403 kb on + strand, within Shewana3_3095 at 3713.430 kb on + strand, within Shewana3_3095 at 3713.503 kb on + strand, within Shewana3_3095 at 3713.503 kb on + strand, within Shewana3_3095 at 3713.503 kb on + strand, within Shewana3_3095 at 3713.503 kb on + strand, within Shewana3_3095 at 3713.567 kb on - strand, within Shewana3_3095
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0001 mg/ml remove 3,711,070 + Shewana3_3093 0.47 -0.7 3,711,070 + Shewana3_3093 0.47 +0.9 3,711,072 + Shewana3_3093 0.47 -1.4 3,711,102 - Shewana3_3093 0.50 +1.5 3,711,174 - Shewana3_3093 0.55 +0.1 3,711,287 - Shewana3_3093 0.64 -0.4 3,711,556 - Shewana3_3093 0.85 +0.7 3,711,577 - Shewana3_3093 0.87 -0.7 3,711,587 - Shewana3_3093 0.87 -0.4 3,711,634 - +0.5 3,711,636 - +0.2 3,711,637 - -0.9 3,711,681 - +0.4 3,711,926 + +0.9 3,712,103 + -0.1 3,712,154 - Shewana3_3094 0.16 +2.0 3,712,247 - Shewana3_3094 0.27 +0.6 3,712,393 + Shewana3_3094 0.45 +0.6 3,712,460 + Shewana3_3094 0.53 -0.6 3,712,513 - Shewana3_3094 0.60 +0.5 3,712,565 + Shewana3_3094 0.66 -0.3 3,712,626 + Shewana3_3094 0.73 -1.7 3,712,634 - Shewana3_3094 0.74 +0.4 3,712,930 - Shewana3_3095 0.10 +0.6 3,713,012 + Shewana3_3095 0.19 -0.1 3,713,012 + Shewana3_3095 0.19 +0.3 3,713,012 + Shewana3_3095 0.19 -0.1 3,713,012 + Shewana3_3095 0.19 -1.1 3,713,062 - Shewana3_3095 0.25 -0.6 3,713,062 - Shewana3_3095 0.25 +0.7 3,713,403 + Shewana3_3095 0.62 -0.1 3,713,430 + Shewana3_3095 0.65 +0.9 3,713,503 + Shewana3_3095 0.73 -0.7 3,713,503 + Shewana3_3095 0.73 -0.2 3,713,503 + Shewana3_3095 0.73 +1.9 3,713,503 + Shewana3_3095 0.73 -0.7 3,713,567 - Shewana3_3095 0.80 +0.6
Or see this region's nucleotide sequence