Experiment: Chloramphenicol 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3065 and Shewana3_3066 are separated by 19 nucleotides Shewana3_3066 and Shewana3_3067 are separated by 127 nucleotides Shewana3_3067 and Shewana3_3068 overlap by 8 nucleotides Shewana3_3068 and Shewana3_3069 are separated by 74 nucleotides
Shewana3_3065: Shewana3_3065 - hypothetical protein (RefSeq), at 3,678,088 to 3,678,468
_3065
Shewana3_3066: Shewana3_3066 - hypothetical protein (RefSeq), at 3,678,488 to 3,678,943
_3066
Shewana3_3067: Shewana3_3067 - iron-sulfur cluster insertion protein ErpA (RefSeq), at 3,679,071 to 3,679,421
_3067
Shewana3_3068: Shewana3_3068 - hypothetical protein (RefSeq), at 3,679,414 to 3,680,220
_3068
Shewana3_3069: Shewana3_3069 - Cl- channel, voltage-gated family protein (RefSeq), at 3,680,295 to 3,682,019
_3069
Position (kb)
3679
3680
3681 Strain fitness (log2 ratio)
-2
-1
0
1 at 3678.463 kb on + strand at 3678.538 kb on - strand, within Shewana3_3066 at 3678.583 kb on + strand, within Shewana3_3066 at 3678.679 kb on + strand, within Shewana3_3066 at 3678.741 kb on - strand, within Shewana3_3066 at 3678.754 kb on - strand, within Shewana3_3066 at 3678.907 kb on + strand at 3679.532 kb on - strand, within Shewana3_3068 at 3679.551 kb on + strand, within Shewana3_3068 at 3679.620 kb on + strand, within Shewana3_3068 at 3679.626 kb on - strand, within Shewana3_3068 at 3679.732 kb on - strand, within Shewana3_3068 at 3679.747 kb on + strand, within Shewana3_3068 at 3679.755 kb on - strand, within Shewana3_3068 at 3679.883 kb on - strand, within Shewana3_3068 at 3680.102 kb on - strand, within Shewana3_3068 at 3680.106 kb on + strand, within Shewana3_3068 at 3680.232 kb on - strand at 3680.278 kb on - strand at 3680.278 kb on - strand at 3680.285 kb on + strand at 3680.285 kb on + strand at 3680.293 kb on - strand at 3680.388 kb on + strand at 3680.496 kb on - strand, within Shewana3_3069 at 3680.636 kb on - strand, within Shewana3_3069 at 3680.878 kb on - strand, within Shewana3_3069 at 3680.930 kb on - strand, within Shewana3_3069 at 3680.935 kb on + strand, within Shewana3_3069 at 3681.061 kb on + strand, within Shewana3_3069 at 3681.061 kb on + strand, within Shewana3_3069 at 3681.066 kb on + strand, within Shewana3_3069 at 3681.069 kb on - strand, within Shewana3_3069 at 3681.112 kb on - strand, within Shewana3_3069 at 3681.131 kb on - strand, within Shewana3_3069 at 3681.191 kb on - strand, within Shewana3_3069
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0001 mg/ml remove 3,678,463 + -0.3 3,678,538 - Shewana3_3066 0.11 -0.7 3,678,583 + Shewana3_3066 0.21 +0.6 3,678,679 + Shewana3_3066 0.42 +0.7 3,678,741 - Shewana3_3066 0.55 -0.5 3,678,754 - Shewana3_3066 0.58 +0.7 3,678,907 + +0.5 3,679,532 - Shewana3_3068 0.15 +0.1 3,679,551 + Shewana3_3068 0.17 -0.7 3,679,620 + Shewana3_3068 0.26 +0.9 3,679,626 - Shewana3_3068 0.26 +1.4 3,679,732 - Shewana3_3068 0.39 +0.4 3,679,747 + Shewana3_3068 0.41 +0.3 3,679,755 - Shewana3_3068 0.42 +0.5 3,679,883 - Shewana3_3068 0.58 -0.1 3,680,102 - Shewana3_3068 0.85 +1.1 3,680,106 + Shewana3_3068 0.86 -1.6 3,680,232 - -0.0 3,680,278 - -0.6 3,680,278 - +0.5 3,680,285 + +0.9 3,680,285 + -0.6 3,680,293 - +0.2 3,680,388 + +1.0 3,680,496 - Shewana3_3069 0.12 -0.3 3,680,636 - Shewana3_3069 0.20 -0.4 3,680,878 - Shewana3_3069 0.34 -0.4 3,680,930 - Shewana3_3069 0.37 -1.8 3,680,935 + Shewana3_3069 0.37 -1.0 3,681,061 + Shewana3_3069 0.44 -0.9 3,681,061 + Shewana3_3069 0.44 -0.3 3,681,066 + Shewana3_3069 0.45 +1.0 3,681,069 - Shewana3_3069 0.45 -0.6 3,681,112 - Shewana3_3069 0.47 +0.4 3,681,131 - Shewana3_3069 0.48 -0.2 3,681,191 - Shewana3_3069 0.52 +0.1
Or see this region's nucleotide sequence