Experiment: Chloramphenicol 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3064 and Shewana3_3065 are separated by 155 nucleotides Shewana3_3065 and Shewana3_3066 are separated by 19 nucleotides Shewana3_3066 and Shewana3_3067 are separated by 127 nucleotides Shewana3_3067 and Shewana3_3068 overlap by 8 nucleotides
Shewana3_3064: Shewana3_3064 - aquaporin Z (RefSeq), at 3,677,237 to 3,677,932
_3064
Shewana3_3065: Shewana3_3065 - hypothetical protein (RefSeq), at 3,678,088 to 3,678,468
_3065
Shewana3_3066: Shewana3_3066 - hypothetical protein (RefSeq), at 3,678,488 to 3,678,943
_3066
Shewana3_3067: Shewana3_3067 - iron-sulfur cluster insertion protein ErpA (RefSeq), at 3,679,071 to 3,679,421
_3067
Shewana3_3068: Shewana3_3068 - hypothetical protein (RefSeq), at 3,679,414 to 3,680,220
_3068
Position (kb)
3678
3679 Strain fitness (log2 ratio)
-1
0
1 at 3677.312 kb on + strand, within Shewana3_3064 at 3677.531 kb on + strand, within Shewana3_3064 at 3677.531 kb on + strand, within Shewana3_3064 at 3677.531 kb on + strand, within Shewana3_3064 at 3677.647 kb on - strand, within Shewana3_3064 at 3677.663 kb on + strand, within Shewana3_3064 at 3677.711 kb on + strand, within Shewana3_3064 at 3677.711 kb on + strand, within Shewana3_3064 at 3677.711 kb on + strand, within Shewana3_3064 at 3677.711 kb on + strand, within Shewana3_3064 at 3677.711 kb on + strand, within Shewana3_3064 at 3677.719 kb on - strand, within Shewana3_3064 at 3677.719 kb on - strand, within Shewana3_3064 at 3677.719 kb on - strand, within Shewana3_3064 at 3677.743 kb on + strand, within Shewana3_3064 at 3677.751 kb on + strand, within Shewana3_3064 at 3677.751 kb on + strand, within Shewana3_3064 at 3677.922 kb on - strand at 3678.016 kb on + strand at 3678.046 kb on + strand at 3678.055 kb on + strand at 3678.062 kb on - strand at 3678.108 kb on - strand at 3678.108 kb on - strand at 3678.155 kb on - strand, within Shewana3_3065 at 3678.181 kb on + strand, within Shewana3_3065 at 3678.206 kb on - strand, within Shewana3_3065 at 3678.286 kb on + strand, within Shewana3_3065 at 3678.402 kb on - strand, within Shewana3_3065 at 3678.463 kb on + strand at 3678.538 kb on - strand, within Shewana3_3066 at 3678.583 kb on + strand, within Shewana3_3066 at 3678.679 kb on + strand, within Shewana3_3066 at 3678.741 kb on - strand, within Shewana3_3066 at 3678.754 kb on - strand, within Shewana3_3066 at 3678.907 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0001 mg/ml remove 3,677,312 + Shewana3_3064 0.11 +1.2 3,677,531 + Shewana3_3064 0.42 -0.1 3,677,531 + Shewana3_3064 0.42 -0.3 3,677,531 + Shewana3_3064 0.42 -0.1 3,677,647 - Shewana3_3064 0.59 +0.3 3,677,663 + Shewana3_3064 0.61 -0.6 3,677,711 + Shewana3_3064 0.68 -0.3 3,677,711 + Shewana3_3064 0.68 -0.4 3,677,711 + Shewana3_3064 0.68 +0.0 3,677,711 + Shewana3_3064 0.68 +0.2 3,677,711 + Shewana3_3064 0.68 +0.2 3,677,719 - Shewana3_3064 0.69 -0.4 3,677,719 - Shewana3_3064 0.69 -0.9 3,677,719 - Shewana3_3064 0.69 +1.2 3,677,743 + Shewana3_3064 0.73 -0.8 3,677,751 + Shewana3_3064 0.74 +0.1 3,677,751 + Shewana3_3064 0.74 +0.2 3,677,922 - -0.2 3,678,016 + +0.1 3,678,046 + +0.9 3,678,055 + +0.3 3,678,062 - +0.4 3,678,108 - -0.6 3,678,108 - -0.4 3,678,155 - Shewana3_3065 0.18 -1.6 3,678,181 + Shewana3_3065 0.24 +0.7 3,678,206 - Shewana3_3065 0.31 -1.4 3,678,286 + Shewana3_3065 0.52 +1.0 3,678,402 - Shewana3_3065 0.82 +0.3 3,678,463 + -0.3 3,678,538 - Shewana3_3066 0.11 -0.7 3,678,583 + Shewana3_3066 0.21 +0.6 3,678,679 + Shewana3_3066 0.42 +0.7 3,678,741 - Shewana3_3066 0.55 -0.5 3,678,754 - Shewana3_3066 0.58 +0.7 3,678,907 + +0.5
Or see this region's nucleotide sequence