Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2973
Experiment: Chloramphenicol 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Chloramphenicol 0.0001 mg/ml |
---|---|---|---|---|---|
remove | |||||
3,573,281 | + | Shewana3_2972 | 0.50 | +0.3 | |
3,573,402 | + | Shewana3_2972 | 0.60 | -1.6 | |
3,573,971 | + | +0.8 | |||
3,574,070 | + | Shewana3_2973 | 0.16 | +0.9 | |
3,574,070 | + | Shewana3_2973 | 0.16 | -0.0 | |
3,574,086 | + | Shewana3_2973 | 0.19 | +0.7 | |
3,574,661 | + | +1.5 | |||
3,574,661 | + | -1.7 | |||
3,574,760 | - | +1.3 | |||
3,574,824 | + | -2.2 | |||
3,574,911 | + | Shewana3_2974 | 0.11 | -0.3 | |
3,574,919 | - | Shewana3_2974 | 0.12 | +0.3 | |
3,575,022 | + | Shewana3_2974 | 0.18 | -0.7 | |
3,575,347 | + | Shewana3_2974 | 0.36 | +0.3 | |
3,575,473 | + | Shewana3_2974 | 0.44 | -1.2 | |
3,575,473 | + | Shewana3_2974 | 0.44 | -0.2 | |
3,575,481 | - | Shewana3_2974 | 0.44 | -0.2 | |
3,575,481 | - | Shewana3_2974 | 0.44 | +0.2 | |
3,575,481 | - | Shewana3_2974 | 0.44 | -0.5 | |
3,575,527 | + | Shewana3_2974 | 0.47 | +0.9 | |
3,575,567 | - | Shewana3_2974 | 0.49 | +0.1 | |
3,575,576 | + | Shewana3_2974 | 0.50 | +1.9 | |
3,575,618 | + | Shewana3_2974 | 0.52 | -1.1 |
Or see this region's nucleotide sequence