Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2963

Experiment: Chloramphenicol 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Chloramphenicol 0.0001 mg/ml
3,557,807	-		Shewana3_2962	0.37	+1.2
3,557,984	-		Shewana3_2962	0.53	+1.5
3,558,225	-		Shewana3_2962	0.74	-1.8
3,558,399	-		Shewana3_2962	0.90	+0.5
3,558,441	-				+1.6
3,558,671	-				+0.8
3,558,691	+				+0.4
3,558,819	+				-0.6
3,558,819	+				-0.4
3,558,827	-				-0.7
3,558,886	+				+0.3
3,558,943	+				-0.1
3,559,110	+	hsdR	Shewana3_2963	0.13	-0.6
3,559,170	+	hsdR	Shewana3_2963	0.15	-0.4
3,559,403	+	hsdR	Shewana3_2963	0.22	-0.1
3,559,411	-	hsdR	Shewana3_2963	0.22	-0.1
3,559,508	+	hsdR	Shewana3_2963	0.25	+0.9
3,559,514	+	hsdR	Shewana3_2963	0.25	+1.1
3,559,591	+	hsdR	Shewana3_2963	0.27	-2.1
3,559,591	+	hsdR	Shewana3_2963	0.27	-2.2
3,559,599	-	hsdR	Shewana3_2963	0.27	-1.8
3,559,897	-	hsdR	Shewana3_2963	0.36	+1.0
3,559,920	-	hsdR	Shewana3_2963	0.37	-0.4
3,560,048	-	hsdR	Shewana3_2963	0.40	-0.6
3,560,072	+	hsdR	Shewana3_2963	0.41	-0.7
3,560,237	+	hsdR	Shewana3_2963	0.46	-0.8
3,560,264	+	hsdR	Shewana3_2963	0.46	-2.9
3,560,272	-	hsdR	Shewana3_2963	0.47	+0.7
3,560,491	-	hsdR	Shewana3_2963	0.53	-1.8
3,560,984	+	hsdR	Shewana3_2963	0.67	+1.9
3,561,051	+	hsdR	Shewana3_2963	0.69	+0.0
3,561,154	-	hsdR	Shewana3_2963	0.72	-1.4
3,561,157	-	hsdR	Shewana3_2963	0.72	-0.9
3,561,197	-	hsdR	Shewana3_2963	0.73	+0.9
3,561,238	-	hsdR	Shewana3_2963	0.74	-0.3
3,561,299	-	hsdR	Shewana3_2963	0.76	-0.3
3,561,396	-	hsdR	Shewana3_2963	0.79	-1.1
3,561,458	-	hsdR	Shewana3_2963	0.80	-2.1
3,561,478	-	hsdR	Shewana3_2963	0.81	-1.5
3,561,538	+	hsdR	Shewana3_2963	0.83	-1.2
3,561,607	-	hsdR	Shewana3_2963	0.85	-0.9
3,561,800	+				+0.3
3,561,821	+				+0.9
3,561,821	+				-0.9
3,561,821	+				-0.7
3,561,953	-				+0.7
3,561,989	-				-0.2
3,561,991	-				-0.4
3,562,009	-				+0.2
3,562,012	-				+0.9
3,562,018	-				-1.9
3,562,219	+				-0.1
3,562,260	-				+0.2
3,562,417	-				-2.8
3,562,440	+				-1.5
3,562,460	+				-0.7
3,562,462	+				+0.4
3,562,512	+		Shewana3_2964	0.13	-0.7
3,562,512	+		Shewana3_2964	0.13	-0.7
3,562,520	-		Shewana3_2964	0.14	-1.4
3,562,639	-		Shewana3_2964	0.26	-1.3
3,562,655	+		Shewana3_2964	0.28	-1.5
3,562,663	-		Shewana3_2964	0.29	-1.5
3,562,664	+		Shewana3_2964	0.29	-0.7
3,562,677	+		Shewana3_2964	0.30	-0.0
3,562,679	+		Shewana3_2964	0.31	-0.2
3,562,715	+		Shewana3_2964	0.34	+0.4
3,562,715	+		Shewana3_2964	0.34	+0.3
3,562,723	-		Shewana3_2964	0.35	+0.9
3,562,723	-		Shewana3_2964	0.35	+0.3
3,562,734	+		Shewana3_2964	0.36	-1.5
3,562,770	-		Shewana3_2964	0.40	-0.1
3,562,780	-		Shewana3_2964	0.41	+0.1
3,562,849	+		Shewana3_2964	0.48	-0.1
3,562,896	+		Shewana3_2964	0.53	-0.8
3,562,902	-		Shewana3_2964	0.54	+0.3
3,562,904	-		Shewana3_2964	0.54	-0.8
3,562,905	+		Shewana3_2964	0.54	-1.0
3,562,905	+		Shewana3_2964	0.54	-0.3
3,562,909	+		Shewana3_2964	0.55	+0.3
3,562,910	+		Shewana3_2964	0.55	+0.9
3,562,913	-		Shewana3_2964	0.55	-1.3
3,562,921	+		Shewana3_2964	0.56	-0.7
3,562,921	+		Shewana3_2964	0.56	-0.4
3,562,923	-		Shewana3_2964	0.56	-1.4
3,562,929	-		Shewana3_2964	0.57	-0.7
3,562,931	+		Shewana3_2964	0.57	-2.1
3,563,016	+		Shewana3_2964	0.66	-1.8
3,563,016	+		Shewana3_2964	0.66	-0.0
3,563,016	+		Shewana3_2964	0.66	+0.3
3,563,016	+		Shewana3_2964	0.66	+0.1
3,563,022	+		Shewana3_2964	0.67	-2.5
3,563,024	-		Shewana3_2964	0.67	-0.9
3,563,024	-		Shewana3_2964	0.67	-2.3
3,563,024	-		Shewana3_2964	0.67	-0.5
3,563,024	-		Shewana3_2964	0.67	-2.3
3,563,024	-		Shewana3_2964	0.67	-1.9
3,563,024	-		Shewana3_2964	0.67	+1.9
3,563,060	+		Shewana3_2964	0.71	+0.3
3,563,065	+		Shewana3_2964	0.71	-1.5
3,563,075	+		Shewana3_2964	0.72	-0.4
3,563,127	-		Shewana3_2964	0.78	-0.7