Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2937

Experiment: Chloramphenicol 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2936 and Shewana3_2937 are separated by 58 nucleotidesShewana3_2937 and Shewana3_2938 are separated by 306 nucleotides Shewana3_2936: Shewana3_2936 - peptidyl-prolyl cis-trans isomerase, cyclophilin type (RefSeq), at 3,526,850 to 3,527,485 _2936 Shewana3_2937: Shewana3_2937 - MarR family transcriptional regulator (RefSeq), at 3,527,544 to 3,528,041 _2937 Shewana3_2938: Shewana3_2938 - iron-containing alcohol dehydrogenase (RefSeq), at 3,528,348 to 3,529,496 _2938 Position (kb) 3527 3528 3529Strain fitness (log2 ratio) -1 0 1at 3526.577 kb on - strandat 3526.964 kb on + strand, within Shewana3_2936at 3526.977 kb on + strand, within Shewana3_2936at 3527.015 kb on + strand, within Shewana3_2936at 3527.040 kb on + strand, within Shewana3_2936at 3527.273 kb on + strand, within Shewana3_2936at 3527.328 kb on + strand, within Shewana3_2936at 3527.328 kb on + strand, within Shewana3_2936at 3527.336 kb on - strand, within Shewana3_2936at 3527.376 kb on - strand, within Shewana3_2936at 3527.383 kb on + strand, within Shewana3_2936at 3527.388 kb on + strand, within Shewana3_2936at 3527.391 kb on - strand, within Shewana3_2936at 3527.508 kb on + strandat 3527.585 kb on - strandat 3527.602 kb on + strand, within Shewana3_2937at 3527.980 kb on + strand, within Shewana3_2937at 3528.259 kb on - strandat 3528.473 kb on - strand, within Shewana3_2938at 3528.542 kb on - strand, within Shewana3_2938at 3528.556 kb on + strand, within Shewana3_2938at 3528.580 kb on - strand, within Shewana3_2938at 3528.942 kb on + strand, within Shewana3_2938at 3528.942 kb on + strand, within Shewana3_2938at 3528.950 kb on - strand, within Shewana3_2938at 3529.008 kb on - strand, within Shewana3_2938at 3529.008 kb on - strand, within Shewana3_2938at 3529.011 kb on + strand, within Shewana3_2938at 3529.019 kb on - strand, within Shewana3_2938

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloramphenicol 0.0001 mg/ml
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3,526,577 - -0.9
3,526,964 + Shewana3_2936 0.18 -1.4
3,526,977 + Shewana3_2936 0.20 -1.4
3,527,015 + Shewana3_2936 0.26 +0.1
3,527,040 + Shewana3_2936 0.30 -0.8
3,527,273 + Shewana3_2936 0.67 +0.0
3,527,328 + Shewana3_2936 0.75 +0.1
3,527,328 + Shewana3_2936 0.75 +0.2
3,527,336 - Shewana3_2936 0.76 +0.2
3,527,376 - Shewana3_2936 0.83 -0.8
3,527,383 + Shewana3_2936 0.84 +0.1
3,527,388 + Shewana3_2936 0.85 -1.0
3,527,391 - Shewana3_2936 0.85 +0.1
3,527,508 + -1.3
3,527,585 - +0.9
3,527,602 + Shewana3_2937 0.12 -0.9
3,527,980 + Shewana3_2937 0.88 +0.1
3,528,259 - +0.8
3,528,473 - Shewana3_2938 0.11 +0.2
3,528,542 - Shewana3_2938 0.17 +0.0
3,528,556 + Shewana3_2938 0.18 +0.5
3,528,580 - Shewana3_2938 0.20 +1.5
3,528,942 + Shewana3_2938 0.52 +1.4
3,528,942 + Shewana3_2938 0.52 +1.0
3,528,950 - Shewana3_2938 0.52 -1.6
3,529,008 - Shewana3_2938 0.57 +0.6
3,529,008 - Shewana3_2938 0.57 -0.1
3,529,011 + Shewana3_2938 0.58 +0.5
3,529,019 - Shewana3_2938 0.58 -0.0

Or see this region's nucleotide sequence