Experiment: Chloramphenicol 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2924 and Shewana3_2925 are separated by 145 nucleotides Shewana3_2925 and Shewana3_2926 are separated by 338 nucleotides
Shewana3_2924: Shewana3_2924 - major facilitator transporter (RefSeq), at 3,504,516 to 3,506,060
_2924
Shewana3_2925: Shewana3_2925 - hypothetical protein (RefSeq), at 3,506,206 to 3,506,727
_2925
Shewana3_2926: Shewana3_2926 - extracellular solute-binding protein (RefSeq), at 3,507,066 to 3,507,842
_2926
Position (kb)
3506
3507 Strain fitness (log2 ratio)
-2
-1
0
1 at 3505.222 kb on - strand, within Shewana3_2924 at 3505.312 kb on - strand, within Shewana3_2924 at 3505.360 kb on - strand, within Shewana3_2924 at 3505.568 kb on - strand, within Shewana3_2924 at 3505.728 kb on + strand, within Shewana3_2924 at 3505.743 kb on - strand, within Shewana3_2924 at 3505.765 kb on + strand, within Shewana3_2924 at 3505.915 kb on + strand at 3506.057 kb on + strand at 3506.097 kb on + strand at 3506.265 kb on - strand, within Shewana3_2925 at 3506.287 kb on + strand, within Shewana3_2925 at 3506.506 kb on - strand, within Shewana3_2925 at 3506.519 kb on + strand, within Shewana3_2925 at 3506.527 kb on - strand, within Shewana3_2925 at 3506.535 kb on - strand, within Shewana3_2925 at 3506.601 kb on - strand, within Shewana3_2925 at 3506.767 kb on + strand at 3506.767 kb on + strand at 3506.781 kb on + strand at 3506.857 kb on - strand at 3506.857 kb on - strand at 3507.141 kb on - strand at 3507.189 kb on + strand, within Shewana3_2926 at 3507.213 kb on + strand, within Shewana3_2926 at 3507.301 kb on - strand, within Shewana3_2926 at 3507.432 kb on - strand, within Shewana3_2926 at 3507.569 kb on - strand, within Shewana3_2926
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0001 mg/ml remove 3,505,222 - Shewana3_2924 0.46 +0.6 3,505,312 - Shewana3_2924 0.52 -0.1 3,505,360 - Shewana3_2924 0.55 +0.9 3,505,568 - Shewana3_2924 0.68 -0.1 3,505,728 + Shewana3_2924 0.78 +0.4 3,505,743 - Shewana3_2924 0.79 -0.0 3,505,765 + Shewana3_2924 0.81 -0.8 3,505,915 + -0.2 3,506,057 + +0.8 3,506,097 + +0.7 3,506,265 - Shewana3_2925 0.11 +0.3 3,506,287 + Shewana3_2925 0.16 -1.4 3,506,506 - Shewana3_2925 0.57 +0.8 3,506,519 + Shewana3_2925 0.60 +0.4 3,506,527 - Shewana3_2925 0.61 -0.0 3,506,535 - Shewana3_2925 0.63 +1.0 3,506,601 - Shewana3_2925 0.76 +0.1 3,506,767 + -1.6 3,506,767 + -2.4 3,506,781 + +1.0 3,506,857 - +0.4 3,506,857 - +0.2 3,507,141 - -2.5 3,507,189 + Shewana3_2926 0.16 -2.4 3,507,213 + Shewana3_2926 0.19 -0.6 3,507,301 - Shewana3_2926 0.30 +0.7 3,507,432 - Shewana3_2926 0.47 -0.6 3,507,569 - Shewana3_2926 0.65 -1.1
Or see this region's nucleotide sequence