Experiment: Chloramphenicol 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2887 and Shewana3_2888 are separated by 766 nucleotides Shewana3_2888 and Shewana3_2889 are separated by 228 nucleotides
Shewana3_2887: Shewana3_2887 - hypothetical protein (RefSeq), at 3,455,008 to 3,455,436
_2887
Shewana3_2888: Shewana3_2888 - hypothetical protein (RefSeq), at 3,456,203 to 3,456,859
_2888
Shewana3_2889: Shewana3_2889 - peptidase S9 prolyl oligopeptidase (RefSeq), at 3,457,088 to 3,459,904
_2889
Position (kb)
3456
3457 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3455.225 kb on + strand, within Shewana3_2887 at 3455.640 kb on - strand at 3455.640 kb on - strand at 3455.640 kb on - strand at 3455.966 kb on - strand at 3456.068 kb on + strand at 3456.127 kb on - strand at 3456.569 kb on + strand, within Shewana3_2888 at 3456.685 kb on + strand, within Shewana3_2888 at 3456.706 kb on + strand, within Shewana3_2888 at 3456.714 kb on - strand, within Shewana3_2888 at 3456.797 kb on + strand at 3456.861 kb on - strand at 3456.866 kb on + strand at 3457.118 kb on + strand at 3457.129 kb on + strand at 3457.157 kb on - strand at 3457.491 kb on - strand, within Shewana3_2889 at 3457.539 kb on + strand, within Shewana3_2889 at 3457.539 kb on + strand, within Shewana3_2889 at 3457.723 kb on + strand, within Shewana3_2889 at 3457.836 kb on + strand, within Shewana3_2889 at 3457.836 kb on + strand, within Shewana3_2889 at 3457.836 kb on + strand, within Shewana3_2889 at 3457.844 kb on - strand, within Shewana3_2889 at 3457.844 kb on - strand, within Shewana3_2889
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0001 mg/ml remove 3,455,225 + Shewana3_2887 0.51 -0.6 3,455,640 - +0.2 3,455,640 - -0.7 3,455,640 - -1.4 3,455,966 - +0.2 3,456,068 + +0.2 3,456,127 - -0.8 3,456,569 + Shewana3_2888 0.56 -1.7 3,456,685 + Shewana3_2888 0.73 -0.5 3,456,706 + Shewana3_2888 0.77 -0.9 3,456,714 - Shewana3_2888 0.78 +0.6 3,456,797 + +1.0 3,456,861 - +2.0 3,456,866 + +0.3 3,457,118 + -0.6 3,457,129 + +0.3 3,457,157 - +0.6 3,457,491 - Shewana3_2889 0.14 -2.2 3,457,539 + Shewana3_2889 0.16 -0.8 3,457,539 + Shewana3_2889 0.16 +0.4 3,457,723 + Shewana3_2889 0.23 -1.0 3,457,836 + Shewana3_2889 0.27 -0.2 3,457,836 + Shewana3_2889 0.27 -0.6 3,457,836 + Shewana3_2889 0.27 -0.8 3,457,844 - Shewana3_2889 0.27 -2.1 3,457,844 - Shewana3_2889 0.27 -0.9
Or see this region's nucleotide sequence