Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2888

Experiment: Chloramphenicol 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2887 and Shewana3_2888 are separated by 766 nucleotidesShewana3_2888 and Shewana3_2889 are separated by 228 nucleotides Shewana3_2887: Shewana3_2887 - hypothetical protein (RefSeq), at 3,455,008 to 3,455,436 _2887 Shewana3_2888: Shewana3_2888 - hypothetical protein (RefSeq), at 3,456,203 to 3,456,859 _2888 Shewana3_2889: Shewana3_2889 - peptidase S9 prolyl oligopeptidase (RefSeq), at 3,457,088 to 3,459,904 _2889 Position (kb) 3456 3457Strain fitness (log2 ratio) -2 -1 0 1 2at 3455.225 kb on + strand, within Shewana3_2887at 3455.640 kb on - strandat 3455.640 kb on - strandat 3455.640 kb on - strandat 3455.966 kb on - strandat 3456.068 kb on + strandat 3456.127 kb on - strandat 3456.569 kb on + strand, within Shewana3_2888at 3456.685 kb on + strand, within Shewana3_2888at 3456.706 kb on + strand, within Shewana3_2888at 3456.714 kb on - strand, within Shewana3_2888at 3456.797 kb on + strandat 3456.861 kb on - strandat 3456.866 kb on + strandat 3457.118 kb on + strandat 3457.129 kb on + strandat 3457.157 kb on - strandat 3457.491 kb on - strand, within Shewana3_2889at 3457.539 kb on + strand, within Shewana3_2889at 3457.539 kb on + strand, within Shewana3_2889at 3457.723 kb on + strand, within Shewana3_2889at 3457.836 kb on + strand, within Shewana3_2889at 3457.836 kb on + strand, within Shewana3_2889at 3457.836 kb on + strand, within Shewana3_2889at 3457.844 kb on - strand, within Shewana3_2889at 3457.844 kb on - strand, within Shewana3_2889

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloramphenicol 0.0001 mg/ml
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3,455,225 + Shewana3_2887 0.51 -0.6
3,455,640 - +0.2
3,455,640 - -0.7
3,455,640 - -1.4
3,455,966 - +0.2
3,456,068 + +0.2
3,456,127 - -0.8
3,456,569 + Shewana3_2888 0.56 -1.7
3,456,685 + Shewana3_2888 0.73 -0.5
3,456,706 + Shewana3_2888 0.77 -0.9
3,456,714 - Shewana3_2888 0.78 +0.6
3,456,797 + +1.0
3,456,861 - +2.0
3,456,866 + +0.3
3,457,118 + -0.6
3,457,129 + +0.3
3,457,157 - +0.6
3,457,491 - Shewana3_2889 0.14 -2.2
3,457,539 + Shewana3_2889 0.16 -0.8
3,457,539 + Shewana3_2889 0.16 +0.4
3,457,723 + Shewana3_2889 0.23 -1.0
3,457,836 + Shewana3_2889 0.27 -0.2
3,457,836 + Shewana3_2889 0.27 -0.6
3,457,836 + Shewana3_2889 0.27 -0.8
3,457,844 - Shewana3_2889 0.27 -2.1
3,457,844 - Shewana3_2889 0.27 -0.9

Or see this region's nucleotide sequence