Experiment: Chloramphenicol 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2871 and Shewana3_2872 are separated by 53 nucleotides Shewana3_2872 and Shewana3_2873 are separated by 163 nucleotides Shewana3_2873 and Shewana3_2874 are separated by 28 nucleotides
Shewana3_2871: Shewana3_2871 - hypothetical protein (RefSeq), at 3,433,991 to 3,434,842
_2871
Shewana3_2872: Shewana3_2872 - YfaZ family protein (RefSeq), at 3,434,896 to 3,435,435
_2872
Shewana3_2873: Shewana3_2873 - GCN5-related N-acetyltransferase (RefSeq), at 3,435,599 to 3,436,108
_2873
Shewana3_2874: Shewana3_2874 - MgtE intracellular region (RefSeq), at 3,436,137 to 3,437,507
_2874
Position (kb)
3435
3436
3437 Strain fitness (log2 ratio)
-1
0
1
2 at 3434.601 kb on + strand, within Shewana3_2871 at 3434.601 kb on + strand, within Shewana3_2871 at 3434.609 kb on - strand, within Shewana3_2871 at 3434.745 kb on + strand, within Shewana3_2871 at 3434.844 kb on - strand at 3434.850 kb on - strand at 3434.931 kb on + strand at 3434.982 kb on + strand, within Shewana3_2872 at 3435.007 kb on - strand, within Shewana3_2872 at 3435.379 kb on + strand, within Shewana3_2872 at 3435.711 kb on - strand, within Shewana3_2873 at 3435.802 kb on - strand, within Shewana3_2873 at 3435.814 kb on - strand, within Shewana3_2873 at 3435.821 kb on - strand, within Shewana3_2873 at 3435.877 kb on - strand, within Shewana3_2873 at 3435.988 kb on + strand, within Shewana3_2873 at 3435.988 kb on + strand, within Shewana3_2873 at 3436.148 kb on - strand at 3436.645 kb on + strand, within Shewana3_2874 at 3436.688 kb on - strand, within Shewana3_2874 at 3436.751 kb on - strand, within Shewana3_2874 at 3436.836 kb on - strand, within Shewana3_2874 at 3436.900 kb on - strand, within Shewana3_2874 at 3436.908 kb on - strand, within Shewana3_2874 at 3436.995 kb on - strand, within Shewana3_2874 at 3437.027 kb on - strand, within Shewana3_2874 at 3437.032 kb on - strand, within Shewana3_2874
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0001 mg/ml remove 3,434,601 + Shewana3_2871 0.72 -0.4 3,434,601 + Shewana3_2871 0.72 +0.9 3,434,609 - Shewana3_2871 0.73 -1.4 3,434,745 + Shewana3_2871 0.88 +0.1 3,434,844 - -0.1 3,434,850 - -0.3 3,434,931 + +2.0 3,434,982 + Shewana3_2872 0.16 -0.0 3,435,007 - Shewana3_2872 0.21 +1.1 3,435,379 + Shewana3_2872 0.89 +0.4 3,435,711 - Shewana3_2873 0.22 +1.3 3,435,802 - Shewana3_2873 0.40 -1.7 3,435,814 - Shewana3_2873 0.42 +0.2 3,435,821 - Shewana3_2873 0.44 +0.3 3,435,877 - Shewana3_2873 0.55 +0.3 3,435,988 + Shewana3_2873 0.76 +0.7 3,435,988 + Shewana3_2873 0.76 +0.5 3,436,148 - -0.2 3,436,645 + Shewana3_2874 0.37 +0.1 3,436,688 - Shewana3_2874 0.40 +0.4 3,436,751 - Shewana3_2874 0.45 +1.9 3,436,836 - Shewana3_2874 0.51 +0.3 3,436,900 - Shewana3_2874 0.56 -0.5 3,436,908 - Shewana3_2874 0.56 -1.7 3,436,995 - Shewana3_2874 0.63 +0.1 3,437,027 - Shewana3_2874 0.65 +0.7 3,437,032 - Shewana3_2874 0.65 -1.3
Or see this region's nucleotide sequence