Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2857

Experiment: Chloramphenicol 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2855 and Shewana3_2856 are separated by 132 nucleotidesShewana3_2856 and Shewana3_2857 are separated by 4 nucleotidesShewana3_2857 and Shewana3_2858 are separated by 53 nucleotides Shewana3_2855: Shewana3_2855 - hypothetical protein (RefSeq), at 3,415,366 to 3,415,866 _2855 Shewana3_2856: Shewana3_2856 - cyclic nucleotide-binding protein (RefSeq), at 3,415,999 to 3,416,607 _2856 Shewana3_2857: Shewana3_2857 - fumarylacetoacetate (FAA) hydrolase (RefSeq), at 3,416,612 to 3,417,238 _2857 Shewana3_2858: Shewana3_2858 - succinylglutamate desuccinylase/aspartoacylase (RefSeq), at 3,417,292 to 3,418,305 _2858 Position (kb) 3416 3417 3418Strain fitness (log2 ratio) -2 -1 0 1 2at 3415.849 kb on - strandat 3415.859 kb on - strandat 3415.875 kb on + strandat 3416.146 kb on - strand, within Shewana3_2856at 3416.149 kb on - strand, within Shewana3_2856at 3416.284 kb on - strand, within Shewana3_2856at 3416.381 kb on + strand, within Shewana3_2856at 3416.449 kb on - strand, within Shewana3_2856at 3416.669 kb on + strandat 3416.716 kb on + strand, within Shewana3_2857at 3416.828 kb on + strand, within Shewana3_2857at 3416.908 kb on - strand, within Shewana3_2857at 3417.007 kb on + strand, within Shewana3_2857at 3417.053 kb on - strand, within Shewana3_2857at 3417.074 kb on - strand, within Shewana3_2857at 3417.086 kb on - strand, within Shewana3_2857at 3417.090 kb on + strand, within Shewana3_2857at 3417.231 kb on - strandat 3417.265 kb on - strandat 3417.769 kb on - strand, within Shewana3_2858at 3417.945 kb on + strand, within Shewana3_2858at 3418.163 kb on + strand, within Shewana3_2858at 3418.219 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloramphenicol 0.0001 mg/ml
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3,415,849 - +0.0
3,415,859 - +0.6
3,415,875 + -2.0
3,416,146 - Shewana3_2856 0.24 +1.0
3,416,149 - Shewana3_2856 0.25 +2.0
3,416,284 - Shewana3_2856 0.47 +0.8
3,416,381 + Shewana3_2856 0.63 +0.0
3,416,449 - Shewana3_2856 0.74 +0.4
3,416,669 + -1.7
3,416,716 + Shewana3_2857 0.17 -0.2
3,416,828 + Shewana3_2857 0.34 +1.0
3,416,908 - Shewana3_2857 0.47 +0.2
3,417,007 + Shewana3_2857 0.63 +0.2
3,417,053 - Shewana3_2857 0.70 -1.4
3,417,074 - Shewana3_2857 0.74 -0.4
3,417,086 - Shewana3_2857 0.76 +0.1
3,417,090 + Shewana3_2857 0.76 +0.0
3,417,231 - -0.5
3,417,265 - +0.4
3,417,769 - Shewana3_2858 0.47 +0.5
3,417,945 + Shewana3_2858 0.64 -0.6
3,418,163 + Shewana3_2858 0.86 -0.3
3,418,219 - -1.3

Or see this region's nucleotide sequence