Experiment: Chloramphenicol 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2855 and Shewana3_2856 are separated by 132 nucleotides Shewana3_2856 and Shewana3_2857 are separated by 4 nucleotides Shewana3_2857 and Shewana3_2858 are separated by 53 nucleotides
Shewana3_2855: Shewana3_2855 - hypothetical protein (RefSeq), at 3,415,366 to 3,415,866
_2855
Shewana3_2856: Shewana3_2856 - cyclic nucleotide-binding protein (RefSeq), at 3,415,999 to 3,416,607
_2856
Shewana3_2857: Shewana3_2857 - fumarylacetoacetate (FAA) hydrolase (RefSeq), at 3,416,612 to 3,417,238
_2857
Shewana3_2858: Shewana3_2858 - succinylglutamate desuccinylase/aspartoacylase (RefSeq), at 3,417,292 to 3,418,305
_2858
Position (kb)
3416
3417
3418 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3415.849 kb on - strand at 3415.859 kb on - strand at 3415.875 kb on + strand at 3416.146 kb on - strand, within Shewana3_2856 at 3416.149 kb on - strand, within Shewana3_2856 at 3416.284 kb on - strand, within Shewana3_2856 at 3416.381 kb on + strand, within Shewana3_2856 at 3416.449 kb on - strand, within Shewana3_2856 at 3416.669 kb on + strand at 3416.716 kb on + strand, within Shewana3_2857 at 3416.828 kb on + strand, within Shewana3_2857 at 3416.908 kb on - strand, within Shewana3_2857 at 3417.007 kb on + strand, within Shewana3_2857 at 3417.053 kb on - strand, within Shewana3_2857 at 3417.074 kb on - strand, within Shewana3_2857 at 3417.086 kb on - strand, within Shewana3_2857 at 3417.090 kb on + strand, within Shewana3_2857 at 3417.231 kb on - strand at 3417.265 kb on - strand at 3417.769 kb on - strand, within Shewana3_2858 at 3417.945 kb on + strand, within Shewana3_2858 at 3418.163 kb on + strand, within Shewana3_2858 at 3418.219 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0001 mg/ml remove 3,415,849 - +0.0 3,415,859 - +0.6 3,415,875 + -2.0 3,416,146 - Shewana3_2856 0.24 +1.0 3,416,149 - Shewana3_2856 0.25 +2.0 3,416,284 - Shewana3_2856 0.47 +0.8 3,416,381 + Shewana3_2856 0.63 +0.0 3,416,449 - Shewana3_2856 0.74 +0.4 3,416,669 + -1.7 3,416,716 + Shewana3_2857 0.17 -0.2 3,416,828 + Shewana3_2857 0.34 +1.0 3,416,908 - Shewana3_2857 0.47 +0.2 3,417,007 + Shewana3_2857 0.63 +0.2 3,417,053 - Shewana3_2857 0.70 -1.4 3,417,074 - Shewana3_2857 0.74 -0.4 3,417,086 - Shewana3_2857 0.76 +0.1 3,417,090 + Shewana3_2857 0.76 +0.0 3,417,231 - -0.5 3,417,265 - +0.4 3,417,769 - Shewana3_2858 0.47 +0.5 3,417,945 + Shewana3_2858 0.64 -0.6 3,418,163 + Shewana3_2858 0.86 -0.3 3,418,219 - -1.3
Or see this region's nucleotide sequence