Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2852
Experiment: Chloramphenicol 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Chloramphenicol 0.0001 mg/ml |
---|---|---|---|---|---|
remove | |||||
3,412,830 | + | -0.2 | |||
3,412,888 | + | Shewana3_2851 | 0.13 | -0.3 | |
3,412,888 | + | Shewana3_2851 | 0.13 | -0.3 | |
3,412,960 | + | Shewana3_2851 | 0.27 | +0.9 | |
3,412,961 | - | Shewana3_2851 | 0.27 | -0.5 | |
3,413,049 | + | Shewana3_2851 | 0.43 | -0.3 | |
3,413,249 | + | Shewana3_2851 | 0.79 | -1.5 | |
3,413,299 | - | Shewana3_2851 | 0.88 | -0.3 | |
3,413,373 | - | -1.7 | |||
3,413,650 | - | Shewana3_2852 | 0.30 | -0.6 | |
3,413,657 | - | Shewana3_2852 | 0.32 | +0.4 | |
3,413,659 | + | Shewana3_2852 | 0.32 | -2.6 | |
3,413,694 | + | Shewana3_2852 | 0.41 | -3.1 | |
3,413,863 | + | Shewana3_2852 | 0.82 | -0.3 | |
3,413,983 | - | +0.3 | |||
3,414,053 | + | -0.3 | |||
3,414,287 | + | Shewana3_2853 | 0.28 | +3.0 | |
3,414,358 | - | Shewana3_2853 | 0.37 | +0.2 | |
3,414,372 | - | Shewana3_2853 | 0.38 | +0.1 | |
3,414,451 | - | Shewana3_2853 | 0.48 | +0.1 | |
3,414,660 | - | Shewana3_2853 | 0.74 | +0.4 | |
3,414,737 | + | Shewana3_2853 | 0.83 | +1.0 | |
3,414,826 | + | +2.0 | |||
3,414,845 | - | +0.2 | |||
3,414,937 | - | +0.5 |
Or see this region's nucleotide sequence