Experiment: Chloramphenicol 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2769 and Shewana3_2770 are separated by 163 nucleotides Shewana3_2770 and Shewana3_2771 are separated by 135 nucleotides
Shewana3_2769: Shewana3_2769 - Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12) (from data) , at 3,307,341 to 3,308,498
_2769
Shewana3_2770: Shewana3_2770 - methylmalonate-semialdehyde dehydrogenase [acylating] (RefSeq), at 3,308,662 to 3,310,161
_2770
Shewana3_2771: Shewana3_2771 - acetyl-CoA acetyltransferases (RefSeq), at 3,310,297 to 3,311,487
_2771
Position (kb)
3308
3309
3310
3311 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3307.728 kb on + strand, within Shewana3_2769 at 3307.728 kb on + strand, within Shewana3_2769 at 3307.736 kb on - strand, within Shewana3_2769 at 3307.736 kb on - strand, within Shewana3_2769 at 3307.845 kb on + strand, within Shewana3_2769 at 3307.985 kb on - strand, within Shewana3_2769 at 3308.002 kb on + strand, within Shewana3_2769 at 3308.010 kb on - strand, within Shewana3_2769 at 3308.178 kb on - strand, within Shewana3_2769 at 3308.184 kb on - strand, within Shewana3_2769 at 3308.186 kb on + strand, within Shewana3_2769 at 3308.555 kb on - strand at 3308.639 kb on + strand at 3308.678 kb on - strand at 3308.757 kb on - strand at 3308.956 kb on - strand, within Shewana3_2770 at 3308.956 kb on - strand, within Shewana3_2770 at 3308.956 kb on - strand, within Shewana3_2770 at 3309.041 kb on + strand, within Shewana3_2770 at 3309.049 kb on - strand, within Shewana3_2770 at 3309.199 kb on + strand, within Shewana3_2770 at 3309.207 kb on - strand, within Shewana3_2770 at 3309.454 kb on - strand, within Shewana3_2770 at 3309.870 kb on + strand, within Shewana3_2770 at 3309.944 kb on - strand, within Shewana3_2770 at 3309.944 kb on - strand, within Shewana3_2770 at 3309.965 kb on + strand, within Shewana3_2770 at 3310.023 kb on - strand at 3310.136 kb on + strand at 3310.191 kb on + strand at 3310.212 kb on - strand at 3310.279 kb on - strand at 3310.350 kb on - strand at 3310.372 kb on + strand at 3310.380 kb on - strand at 3310.382 kb on - strand at 3310.652 kb on - strand, within Shewana3_2771 at 3310.652 kb on - strand, within Shewana3_2771 at 3311.022 kb on + strand, within Shewana3_2771 at 3311.022 kb on + strand, within Shewana3_2771 at 3311.153 kb on - strand, within Shewana3_2771
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0001 mg/ml remove 3,307,728 + Shewana3_2769 0.33 -1.7 3,307,728 + Shewana3_2769 0.33 -3.0 3,307,736 - Shewana3_2769 0.34 +1.6 3,307,736 - Shewana3_2769 0.34 +1.8 3,307,845 + Shewana3_2769 0.44 -0.2 3,307,985 - Shewana3_2769 0.56 -0.3 3,308,002 + Shewana3_2769 0.57 +0.0 3,308,010 - Shewana3_2769 0.58 -0.3 3,308,178 - Shewana3_2769 0.72 +0.5 3,308,184 - Shewana3_2769 0.73 -1.5 3,308,186 + Shewana3_2769 0.73 -0.1 3,308,555 - +0.1 3,308,639 + +0.7 3,308,678 - +1.1 3,308,757 - +0.4 3,308,956 - Shewana3_2770 0.20 +1.0 3,308,956 - Shewana3_2770 0.20 +0.4 3,308,956 - Shewana3_2770 0.20 +0.7 3,309,041 + Shewana3_2770 0.25 -0.4 3,309,049 - Shewana3_2770 0.26 +0.6 3,309,199 + Shewana3_2770 0.36 +0.7 3,309,207 - Shewana3_2770 0.36 +1.2 3,309,454 - Shewana3_2770 0.53 +0.5 3,309,870 + Shewana3_2770 0.81 -0.3 3,309,944 - Shewana3_2770 0.85 -0.8 3,309,944 - Shewana3_2770 0.85 -0.6 3,309,965 + Shewana3_2770 0.87 -0.4 3,310,023 - +0.2 3,310,136 + +0.1 3,310,191 + +0.2 3,310,212 - +1.0 3,310,279 - -0.5 3,310,350 - +0.8 3,310,372 + -1.1 3,310,380 - +1.0 3,310,382 - -2.0 3,310,652 - Shewana3_2771 0.30 +0.3 3,310,652 - Shewana3_2771 0.30 +0.3 3,311,022 + Shewana3_2771 0.61 -0.4 3,311,022 + Shewana3_2771 0.61 -1.6 3,311,153 - Shewana3_2771 0.72 -0.2
Or see this region's nucleotide sequence