Experiment: Chloramphenicol 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2743 and Shewana3_2744 are separated by 228 nucleotides Shewana3_2744 and Shewana3_2745 are separated by 368 nucleotides Shewana3_2745 and Shewana3_2746 are separated by 69 nucleotides
Shewana3_2743: Shewana3_2743 - hypothetical protein (RefSeq), at 3,273,983 to 3,274,531
_2743
Shewana3_2744: Shewana3_2744 - hypothetical protein (RefSeq), at 3,274,760 to 3,275,080
_2744
Shewana3_2745: Shewana3_2745 - peptidase S8 and S53, subtilisin, kexin, sedolisin (RefSeq), at 3,275,449 to 3,277,014
_2745
Shewana3_2746: Shewana3_2746 - hypothetical protein (RefSeq), at 3,277,084 to 3,277,914
_2746
Position (kb)
3275
3276
3277
3278 Strain fitness (log2 ratio)
-2
-1
0
1 at 3274.749 kb on + strand at 3274.757 kb on - strand at 3274.775 kb on + strand at 3274.783 kb on - strand at 3274.783 kb on - strand at 3275.159 kb on - strand at 3275.234 kb on - strand at 3275.376 kb on + strand at 3275.376 kb on + strand at 3275.376 kb on + strand at 3275.379 kb on - strand at 3275.666 kb on - strand, within Shewana3_2745 at 3275.804 kb on + strand, within Shewana3_2745 at 3275.854 kb on + strand, within Shewana3_2745 at 3275.854 kb on + strand, within Shewana3_2745 at 3275.962 kb on - strand, within Shewana3_2745 at 3276.219 kb on - strand, within Shewana3_2745 at 3276.374 kb on + strand, within Shewana3_2745 at 3276.382 kb on - strand, within Shewana3_2745 at 3276.629 kb on + strand, within Shewana3_2745 at 3276.999 kb on - strand at 3276.999 kb on - strand at 3277.108 kb on + strand at 3277.138 kb on + strand at 3277.138 kb on + strand at 3277.376 kb on + strand, within Shewana3_2746 at 3277.376 kb on + strand, within Shewana3_2746 at 3277.405 kb on - strand, within Shewana3_2746 at 3277.512 kb on - strand, within Shewana3_2746 at 3277.621 kb on - strand, within Shewana3_2746 at 3277.904 kb on - strand at 3277.904 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0001 mg/ml remove 3,274,749 + -1.7 3,274,757 - +0.1 3,274,775 + -0.0 3,274,783 - -1.4 3,274,783 - -1.3 3,275,159 - -1.9 3,275,234 - -2.2 3,275,376 + -0.4 3,275,376 + -0.2 3,275,376 + -0.5 3,275,379 - +1.1 3,275,666 - Shewana3_2745 0.14 -0.0 3,275,804 + Shewana3_2745 0.23 -1.2 3,275,854 + Shewana3_2745 0.26 +0.7 3,275,854 + Shewana3_2745 0.26 -1.5 3,275,962 - Shewana3_2745 0.33 -0.5 3,276,219 - Shewana3_2745 0.49 +0.7 3,276,374 + Shewana3_2745 0.59 +0.0 3,276,382 - Shewana3_2745 0.60 -0.3 3,276,629 + Shewana3_2745 0.75 +0.5 3,276,999 - -1.6 3,276,999 - +0.1 3,277,108 + -1.3 3,277,138 + -0.1 3,277,138 + -0.8 3,277,376 + Shewana3_2746 0.35 -1.0 3,277,376 + Shewana3_2746 0.35 -1.2 3,277,405 - Shewana3_2746 0.39 -1.0 3,277,512 - Shewana3_2746 0.52 +1.0 3,277,621 - Shewana3_2746 0.65 +0.4 3,277,904 - -1.9 3,277,904 - -0.7
Or see this region's nucleotide sequence