Experiment: Chloramphenicol 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2717 and Shewana3_2718 are separated by 25 nucleotides Shewana3_2718 and Shewana3_2719 are separated by 88 nucleotides Shewana3_2719 and Shewana3_2720 are separated by 653 nucleotides
Shewana3_2717: Shewana3_2717 - hypothetical protein (RefSeq), at 3,248,618 to 3,248,851
_2717
Shewana3_2718: Shewana3_2718 - hypothetical protein (RefSeq), at 3,248,877 to 3,249,239
_2718
Shewana3_2719: Shewana3_2719 - choline/carnitine/betaine transporter (RefSeq), at 3,249,328 to 3,251,304
_2719
Shewana3_2720: Shewana3_2720 - hypothetical protein (RefSeq), at 3,251,958 to 3,252,563
_2720
Position (kb)
3249
3250
3251
3252 Strain fitness (log2 ratio)
-1
0
1
2 at 3248.427 kb on + strand at 3248.435 kb on - strand at 3248.552 kb on + strand at 3248.795 kb on + strand, within Shewana3_2717 at 3248.795 kb on + strand, within Shewana3_2717 at 3248.803 kb on - strand, within Shewana3_2717 at 3248.919 kb on + strand, within Shewana3_2718 at 3248.969 kb on - strand, within Shewana3_2718 at 3249.209 kb on - strand at 3249.229 kb on - strand at 3249.507 kb on - strand at 3249.551 kb on - strand, within Shewana3_2719 at 3249.634 kb on - strand, within Shewana3_2719 at 3249.779 kb on - strand, within Shewana3_2719 at 3249.793 kb on - strand, within Shewana3_2719 at 3249.830 kb on + strand, within Shewana3_2719 at 3249.830 kb on + strand, within Shewana3_2719 at 3249.838 kb on - strand, within Shewana3_2719 at 3249.840 kb on + strand, within Shewana3_2719 at 3249.848 kb on - strand, within Shewana3_2719 at 3249.848 kb on - strand, within Shewana3_2719 at 3249.848 kb on - strand, within Shewana3_2719 at 3249.899 kb on + strand, within Shewana3_2719 at 3249.962 kb on + strand, within Shewana3_2719 at 3249.962 kb on + strand, within Shewana3_2719 at 3250.038 kb on + strand, within Shewana3_2719 at 3250.151 kb on - strand, within Shewana3_2719 at 3250.517 kb on - strand, within Shewana3_2719 at 3250.675 kb on - strand, within Shewana3_2719 at 3250.851 kb on - strand, within Shewana3_2719 at 3250.990 kb on - strand, within Shewana3_2719 at 3251.023 kb on + strand, within Shewana3_2719 at 3251.316 kb on + strand at 3251.324 kb on - strand at 3251.324 kb on - strand at 3251.537 kb on - strand at 3251.642 kb on + strand at 3251.733 kb on - strand at 3251.772 kb on - strand at 3251.773 kb on + strand at 3251.815 kb on - strand at 3252.238 kb on + strand, within Shewana3_2720 at 3252.246 kb on - strand, within Shewana3_2720 at 3252.296 kb on - strand, within Shewana3_2720
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0001 mg/ml remove 3,248,427 + +0.4 3,248,435 - +1.4 3,248,552 + -0.3 3,248,795 + Shewana3_2717 0.76 -0.4 3,248,795 + Shewana3_2717 0.76 +0.7 3,248,803 - Shewana3_2717 0.79 -0.2 3,248,919 + Shewana3_2718 0.12 -0.2 3,248,969 - Shewana3_2718 0.25 +0.5 3,249,209 - +0.3 3,249,229 - +0.0 3,249,507 - +0.8 3,249,551 - Shewana3_2719 0.11 -1.0 3,249,634 - Shewana3_2719 0.15 +0.1 3,249,779 - Shewana3_2719 0.23 +1.5 3,249,793 - Shewana3_2719 0.24 +0.2 3,249,830 + Shewana3_2719 0.25 -1.6 3,249,830 + Shewana3_2719 0.25 -1.5 3,249,838 - Shewana3_2719 0.26 +0.4 3,249,840 + Shewana3_2719 0.26 +1.0 3,249,848 - Shewana3_2719 0.26 +0.8 3,249,848 - Shewana3_2719 0.26 +0.6 3,249,848 - Shewana3_2719 0.26 +0.6 3,249,899 + Shewana3_2719 0.29 -0.3 3,249,962 + Shewana3_2719 0.32 -0.3 3,249,962 + Shewana3_2719 0.32 -0.0 3,250,038 + Shewana3_2719 0.36 -1.0 3,250,151 - Shewana3_2719 0.42 +0.7 3,250,517 - Shewana3_2719 0.60 +0.0 3,250,675 - Shewana3_2719 0.68 +1.2 3,250,851 - Shewana3_2719 0.77 +2.0 3,250,990 - Shewana3_2719 0.84 +1.3 3,251,023 + Shewana3_2719 0.86 +0.2 3,251,316 + -0.2 3,251,324 - -0.0 3,251,324 - -1.5 3,251,537 - -0.8 3,251,642 + +1.0 3,251,733 - +0.4 3,251,772 - -0.7 3,251,773 + +0.4 3,251,815 - +2.0 3,252,238 + Shewana3_2720 0.46 +2.0 3,252,246 - Shewana3_2720 0.48 +1.0 3,252,296 - Shewana3_2720 0.56 -0.7
Or see this region's nucleotide sequence