Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2701
Experiment: Chloramphenicol 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Chloramphenicol 0.0001 mg/ml |
---|---|---|---|---|---|
remove | |||||
3,227,258 | + | Shewana3_2700 | 0.61 | -0.8 | |
3,227,266 | - | Shewana3_2700 | 0.62 | -0.4 | |
3,227,335 | - | Shewana3_2700 | 0.67 | -1.0 | |
3,227,368 | + | Shewana3_2700 | 0.69 | -1.2 | |
3,227,536 | + | Shewana3_2700 | 0.83 | -0.9 | |
3,227,659 | - | -1.0 | |||
3,227,674 | + | -0.9 | |||
3,227,685 | + | -0.8 | |||
3,227,905 | + | Shewana3_2701 | 0.10 | -0.3 | |
3,227,913 | - | Shewana3_2701 | 0.11 | -0.0 | |
3,227,943 | - | Shewana3_2701 | 0.13 | -0.2 | |
3,228,012 | + | Shewana3_2701 | 0.18 | -0.9 | |
3,228,066 | + | Shewana3_2701 | 0.22 | +0.0 | |
3,228,076 | + | Shewana3_2701 | 0.23 | -0.9 | |
3,228,175 | - | Shewana3_2701 | 0.30 | -0.1 | |
3,229,024 | + | -1.6 | |||
3,229,032 | - | +0.5 | |||
3,229,102 | - | -1.7 | |||
3,229,351 | + | Shewana3_2702 | 0.26 | +2.0 | |
3,229,503 | + | Shewana3_2702 | 0.45 | -0.6 | |
3,229,927 | + | -0.7 |
Or see this region's nucleotide sequence