Experiment: Chloramphenicol 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2699 and Shewana3_2700 are separated by 7 nucleotides Shewana3_2700 and Shewana3_2701 are separated by 5 nucleotides
Shewana3_2699: Shewana3_2699 - sugar isomerase (SIS) (RefSeq), at 3,225,306 to 3,226,466
_2699
Shewana3_2700: Shewana3_2700 - tagatose-bisphosphate aldolase noncatalytic subunit (RefSeq), at 3,226,474 to 3,227,760
_2700
Shewana3_2701: Shewana3_2701 - oxidoreductase domain-containing protein (RefSeq), at 3,227,766 to 3,229,136
_2701
Position (kb)
3226
3227
3228 Strain fitness (log2 ratio)
-2
-1
0
1 at 3225.683 kb on + strand, within Shewana3_2699 at 3225.691 kb on - strand, within Shewana3_2699 at 3225.799 kb on + strand, within Shewana3_2699 at 3225.799 kb on + strand, within Shewana3_2699 at 3225.799 kb on + strand, within Shewana3_2699 at 3225.807 kb on - strand, within Shewana3_2699 at 3225.807 kb on - strand, within Shewana3_2699 at 3225.905 kb on - strand, within Shewana3_2699 at 3226.083 kb on + strand, within Shewana3_2699 at 3226.127 kb on + strand, within Shewana3_2699 at 3226.127 kb on + strand, within Shewana3_2699 at 3226.194 kb on - strand, within Shewana3_2699 at 3226.261 kb on - strand, within Shewana3_2699 at 3226.403 kb on + strand at 3226.403 kb on + strand at 3226.488 kb on - strand at 3226.658 kb on - strand, within Shewana3_2700 at 3227.258 kb on + strand, within Shewana3_2700 at 3227.266 kb on - strand, within Shewana3_2700 at 3227.335 kb on - strand, within Shewana3_2700 at 3227.368 kb on + strand, within Shewana3_2700 at 3227.536 kb on + strand, within Shewana3_2700 at 3227.659 kb on - strand at 3227.674 kb on + strand at 3227.685 kb on + strand at 3227.905 kb on + strand, within Shewana3_2701 at 3227.913 kb on - strand, within Shewana3_2701 at 3227.943 kb on - strand, within Shewana3_2701 at 3228.012 kb on + strand, within Shewana3_2701 at 3228.066 kb on + strand, within Shewana3_2701 at 3228.076 kb on + strand, within Shewana3_2701 at 3228.175 kb on - strand, within Shewana3_2701
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0001 mg/ml remove 3,225,683 + Shewana3_2699 0.32 +0.4 3,225,691 - Shewana3_2699 0.33 +0.4 3,225,799 + Shewana3_2699 0.42 -2.3 3,225,799 + Shewana3_2699 0.42 -0.4 3,225,799 + Shewana3_2699 0.42 +0.6 3,225,807 - Shewana3_2699 0.43 -0.1 3,225,807 - Shewana3_2699 0.43 +0.3 3,225,905 - Shewana3_2699 0.52 +0.7 3,226,083 + Shewana3_2699 0.67 -0.9 3,226,127 + Shewana3_2699 0.71 +1.2 3,226,127 + Shewana3_2699 0.71 +0.3 3,226,194 - Shewana3_2699 0.76 -0.5 3,226,261 - Shewana3_2699 0.82 -0.7 3,226,403 + -0.6 3,226,403 + +1.0 3,226,488 - -0.5 3,226,658 - Shewana3_2700 0.14 -0.2 3,227,258 + Shewana3_2700 0.61 -0.8 3,227,266 - Shewana3_2700 0.62 -0.4 3,227,335 - Shewana3_2700 0.67 -1.0 3,227,368 + Shewana3_2700 0.69 -1.2 3,227,536 + Shewana3_2700 0.83 -0.9 3,227,659 - -1.0 3,227,674 + -0.9 3,227,685 + -0.8 3,227,905 + Shewana3_2701 0.10 -0.3 3,227,913 - Shewana3_2701 0.11 -0.0 3,227,943 - Shewana3_2701 0.13 -0.2 3,228,012 + Shewana3_2701 0.18 -0.9 3,228,066 + Shewana3_2701 0.22 +0.0 3,228,076 + Shewana3_2701 0.23 -0.9 3,228,175 - Shewana3_2701 0.30 -0.1
Or see this region's nucleotide sequence