Experiment: Chloramphenicol 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2682 and Shewana3_2683 are separated by 239 nucleotides Shewana3_2683 and Shewana3_2684 are separated by 270 nucleotides
Shewana3_2682: Shewana3_2682 - CdaR family transcriptional regulator (RefSeq), at 3,206,661 to 3,207,893
_2682
Shewana3_2683: Shewana3_2683 - catalase domain-containing protein (RefSeq), at 3,208,133 to 3,209,131
_2683
Shewana3_2684: Shewana3_2684 - gluconate transporter (RefSeq), at 3,209,402 to 3,210,760
_2684
Position (kb)
3208
3209
3210 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3207.200 kb on - strand, within Shewana3_2682 at 3207.342 kb on - strand, within Shewana3_2682 at 3207.532 kb on + strand, within Shewana3_2682 at 3207.539 kb on - strand, within Shewana3_2682 at 3207.551 kb on + strand, within Shewana3_2682 at 3207.584 kb on + strand, within Shewana3_2682 at 3207.613 kb on - strand, within Shewana3_2682 at 3207.644 kb on + strand, within Shewana3_2682 at 3207.673 kb on - strand, within Shewana3_2682 at 3207.692 kb on + strand at 3207.780 kb on - strand at 3208.019 kb on + strand at 3208.021 kb on + strand at 3208.261 kb on - strand, within Shewana3_2683 at 3208.332 kb on - strand, within Shewana3_2683 at 3208.435 kb on + strand, within Shewana3_2683 at 3208.448 kb on - strand, within Shewana3_2683 at 3208.448 kb on - strand, within Shewana3_2683 at 3208.601 kb on + strand, within Shewana3_2683 at 3208.661 kb on - strand, within Shewana3_2683 at 3208.699 kb on - strand, within Shewana3_2683 at 3208.796 kb on - strand, within Shewana3_2683 at 3208.813 kb on + strand, within Shewana3_2683 at 3208.925 kb on + strand, within Shewana3_2683 at 3208.943 kb on - strand, within Shewana3_2683 at 3209.039 kb on + strand at 3209.061 kb on - strand at 3209.281 kb on + strand at 3209.298 kb on + strand at 3209.407 kb on - strand at 3209.407 kb on - strand at 3209.417 kb on + strand at 3209.568 kb on + strand, within Shewana3_2684 at 3209.689 kb on + strand, within Shewana3_2684 at 3209.867 kb on - strand, within Shewana3_2684 at 3209.882 kb on - strand, within Shewana3_2684 at 3210.013 kb on - strand, within Shewana3_2684 at 3210.096 kb on - strand, within Shewana3_2684
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0001 mg/ml remove 3,207,200 - Shewana3_2682 0.44 +0.6 3,207,342 - Shewana3_2682 0.55 +0.2 3,207,532 + Shewana3_2682 0.71 -0.3 3,207,539 - Shewana3_2682 0.71 +0.5 3,207,551 + Shewana3_2682 0.72 +0.4 3,207,584 + Shewana3_2682 0.75 -1.2 3,207,613 - Shewana3_2682 0.77 -0.4 3,207,644 + Shewana3_2682 0.80 +1.0 3,207,673 - Shewana3_2682 0.82 +1.5 3,207,692 + +2.0 3,207,780 - -0.6 3,208,019 + -0.6 3,208,021 + -0.7 3,208,261 - Shewana3_2683 0.13 -0.1 3,208,332 - Shewana3_2683 0.20 +0.9 3,208,435 + Shewana3_2683 0.30 -1.7 3,208,448 - Shewana3_2683 0.32 +1.7 3,208,448 - Shewana3_2683 0.32 -0.7 3,208,601 + Shewana3_2683 0.47 -1.5 3,208,661 - Shewana3_2683 0.53 +0.9 3,208,699 - Shewana3_2683 0.57 -1.7 3,208,796 - Shewana3_2683 0.66 -0.3 3,208,813 + Shewana3_2683 0.68 -0.8 3,208,925 + Shewana3_2683 0.79 -0.6 3,208,943 - Shewana3_2683 0.81 +0.0 3,209,039 + +1.0 3,209,061 - -1.0 3,209,281 + -1.6 3,209,298 + -1.7 3,209,407 - +2.0 3,209,407 - +0.7 3,209,417 + -1.9 3,209,568 + Shewana3_2684 0.12 -1.5 3,209,689 + Shewana3_2684 0.21 -1.0 3,209,867 - Shewana3_2684 0.34 -0.3 3,209,882 - Shewana3_2684 0.35 -2.6 3,210,013 - Shewana3_2684 0.45 -0.1 3,210,096 - Shewana3_2684 0.51 -0.6
Or see this region's nucleotide sequence