Experiment: Chloramphenicol 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2676 and Shewana3_2677 are separated by 68 nucleotides Shewana3_2677 and Shewana3_2678 are separated by 12 nucleotides
Shewana3_2676: Shewana3_2676 - decaheme cytochrome c (RefSeq), at 3,198,135 to 3,200,087
_2676
Shewana3_2677: Shewana3_2677 - cytochrome C family protein (RefSeq), at 3,200,156 to 3,201,145
_2677
Shewana3_2678: Shewana3_2678 - outer membrane protein precursor MtrB (RefSeq), at 3,201,158 to 3,203,245
_2678
Position (kb)
3200
3201
3202 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3199.342 kb on - strand, within Shewana3_2676 at 3199.350 kb on + strand, within Shewana3_2676 at 3199.359 kb on + strand, within Shewana3_2676 at 3199.442 kb on - strand, within Shewana3_2676 at 3199.452 kb on + strand, within Shewana3_2676 at 3199.589 kb on - strand, within Shewana3_2676 at 3199.626 kb on - strand, within Shewana3_2676 at 3199.628 kb on + strand, within Shewana3_2676 at 3199.785 kb on + strand, within Shewana3_2676 at 3199.806 kb on + strand, within Shewana3_2676 at 3199.830 kb on + strand, within Shewana3_2676 at 3199.852 kb on + strand, within Shewana3_2676 at 3199.930 kb on - strand at 3200.044 kb on + strand at 3200.161 kb on - strand at 3200.288 kb on + strand, within Shewana3_2677 at 3200.383 kb on + strand, within Shewana3_2677 at 3200.391 kb on - strand, within Shewana3_2677 at 3200.411 kb on - strand, within Shewana3_2677 at 3200.459 kb on + strand, within Shewana3_2677 at 3200.473 kb on - strand, within Shewana3_2677 at 3200.605 kb on - strand, within Shewana3_2677 at 3200.699 kb on - strand, within Shewana3_2677 at 3200.767 kb on - strand, within Shewana3_2677 at 3200.810 kb on + strand, within Shewana3_2677 at 3200.876 kb on - strand, within Shewana3_2677 at 3200.917 kb on + strand, within Shewana3_2677 at 3200.951 kb on + strand, within Shewana3_2677 at 3201.032 kb on + strand, within Shewana3_2677 at 3201.147 kb on - strand at 3201.304 kb on - strand at 3201.338 kb on - strand at 3201.494 kb on - strand, within Shewana3_2678 at 3201.507 kb on + strand, within Shewana3_2678 at 3201.632 kb on - strand, within Shewana3_2678 at 3201.738 kb on - strand, within Shewana3_2678 at 3202.051 kb on + strand, within Shewana3_2678
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0001 mg/ml remove 3,199,342 - Shewana3_2676 0.62 +0.2 3,199,350 + Shewana3_2676 0.62 +0.9 3,199,359 + Shewana3_2676 0.63 +0.3 3,199,442 - Shewana3_2676 0.67 -2.2 3,199,452 + Shewana3_2676 0.67 +1.2 3,199,589 - Shewana3_2676 0.74 +1.5 3,199,626 - Shewana3_2676 0.76 -1.1 3,199,628 + Shewana3_2676 0.76 +1.1 3,199,785 + Shewana3_2676 0.84 +1.0 3,199,806 + Shewana3_2676 0.86 +0.6 3,199,830 + Shewana3_2676 0.87 +0.4 3,199,852 + Shewana3_2676 0.88 +1.1 3,199,930 - -0.2 3,200,044 + +0.0 3,200,161 - +0.5 3,200,288 + Shewana3_2677 0.13 +0.0 3,200,383 + Shewana3_2677 0.23 +0.4 3,200,391 - Shewana3_2677 0.24 +1.8 3,200,411 - Shewana3_2677 0.26 +0.7 3,200,459 + Shewana3_2677 0.31 +0.5 3,200,473 - Shewana3_2677 0.32 +0.6 3,200,605 - Shewana3_2677 0.45 +2.4 3,200,699 - Shewana3_2677 0.55 +0.7 3,200,767 - Shewana3_2677 0.62 +0.4 3,200,810 + Shewana3_2677 0.66 -0.4 3,200,876 - Shewana3_2677 0.73 +0.4 3,200,917 + Shewana3_2677 0.77 +0.8 3,200,951 + Shewana3_2677 0.80 -0.1 3,201,032 + Shewana3_2677 0.88 +0.2 3,201,147 - -0.7 3,201,304 - +0.0 3,201,338 - -0.3 3,201,494 - Shewana3_2678 0.16 -1.3 3,201,507 + Shewana3_2678 0.17 +0.0 3,201,632 - Shewana3_2678 0.23 +1.6 3,201,738 - Shewana3_2678 0.28 -1.0 3,202,051 + Shewana3_2678 0.43 -0.1
Or see this region's nucleotide sequence