Experiment: Chloramphenicol 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2614 and Shewana3_2615 are separated by 54 nucleotides Shewana3_2615 and Shewana3_2616 are separated by 22 nucleotides Shewana3_2616 and Shewana3_2617 are separated by 70 nucleotides Shewana3_2617 and Shewana3_2618 are separated by 73 nucleotides Shewana3_2618 and Shewana3_2619 are separated by 180 nucleotides
Shewana3_2614: Shewana3_2614 - LysR family transcriptional regulator (RefSeq), at 3,120,963 to 3,121,925
_2614
Shewana3_2615: Shewana3_2615 - hypothetical protein (RefSeq), at 3,121,980 to 3,122,366
_2615
Shewana3_2616: Shewana3_2616 - RNA-binding S4 domain-containing protein (RefSeq), at 3,122,389 to 3,122,619
_2616
Shewana3_2617: Shewana3_2617 - GCN5-related N-acetyltransferase (RefSeq), at 3,122,690 to 3,123,226
_2617
Shewana3_2618: Shewana3_2618 - PpiC-type peptidyl-prolyl cis-trans isomerase (RefSeq), at 3,123,300 to 3,123,578
_2618
Shewana3_2619: Shewana3_2619 - hypothetical protein (RefSeq), at 3,123,759 to 3,125,594
_2619
Position (kb)
3122
3123
3124 Strain fitness (log2 ratio)
-1
0
1
2 at 3121.727 kb on - strand, within Shewana3_2614 at 3121.776 kb on - strand, within Shewana3_2614 at 3121.788 kb on + strand, within Shewana3_2614 at 3121.796 kb on - strand, within Shewana3_2614 at 3121.796 kb on - strand, within Shewana3_2614 at 3121.796 kb on - strand, within Shewana3_2614 at 3121.832 kb on - strand at 3121.908 kb on + strand at 3122.141 kb on - strand, within Shewana3_2615 at 3122.301 kb on - strand, within Shewana3_2615 at 3122.550 kb on - strand, within Shewana3_2616 at 3122.833 kb on - strand, within Shewana3_2617 at 3122.873 kb on + strand, within Shewana3_2617 at 3122.890 kb on + strand, within Shewana3_2617 at 3122.920 kb on - strand, within Shewana3_2617 at 3122.921 kb on - strand, within Shewana3_2617 at 3122.921 kb on - strand, within Shewana3_2617 at 3123.067 kb on - strand, within Shewana3_2617 at 3123.069 kb on + strand, within Shewana3_2617 at 3123.079 kb on + strand, within Shewana3_2617 at 3123.151 kb on - strand, within Shewana3_2617 at 3123.173 kb on + strand at 3123.196 kb on + strand at 3123.204 kb on - strand at 3123.343 kb on + strand, within Shewana3_2618 at 3123.507 kb on + strand, within Shewana3_2618 at 3123.523 kb on + strand, within Shewana3_2618 at 3123.531 kb on - strand, within Shewana3_2618 at 3123.536 kb on - strand, within Shewana3_2618 at 3123.697 kb on + strand at 3123.907 kb on - strand at 3124.225 kb on + strand, within Shewana3_2619
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0001 mg/ml remove 3,121,727 - Shewana3_2614 0.79 -0.2 3,121,776 - Shewana3_2614 0.84 -1.2 3,121,788 + Shewana3_2614 0.86 +0.4 3,121,796 - Shewana3_2614 0.87 -1.0 3,121,796 - Shewana3_2614 0.87 +1.0 3,121,796 - Shewana3_2614 0.87 +0.6 3,121,832 - +0.0 3,121,908 + +0.2 3,122,141 - Shewana3_2615 0.42 +1.8 3,122,301 - Shewana3_2615 0.83 +1.6 3,122,550 - Shewana3_2616 0.70 +1.4 3,122,833 - Shewana3_2617 0.27 -1.3 3,122,873 + Shewana3_2617 0.34 -0.2 3,122,890 + Shewana3_2617 0.37 +0.3 3,122,920 - Shewana3_2617 0.43 +0.2 3,122,921 - Shewana3_2617 0.43 +0.6 3,122,921 - Shewana3_2617 0.43 -0.1 3,123,067 - Shewana3_2617 0.70 -1.2 3,123,069 + Shewana3_2617 0.71 -0.4 3,123,079 + Shewana3_2617 0.72 +1.3 3,123,151 - Shewana3_2617 0.86 -0.5 3,123,173 + +0.3 3,123,196 + -0.7 3,123,204 - -0.3 3,123,343 + Shewana3_2618 0.15 +2.0 3,123,507 + Shewana3_2618 0.74 -1.0 3,123,523 + Shewana3_2618 0.80 +0.0 3,123,531 - Shewana3_2618 0.83 -0.2 3,123,536 - Shewana3_2618 0.85 +1.3 3,123,697 + -1.6 3,123,907 - +0.0 3,124,225 + Shewana3_2619 0.25 +0.0
Or see this region's nucleotide sequence