Experiment: Chloramphenicol 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2588 and Shewana3_2589 are separated by 151 nucleotides Shewana3_2589 and Shewana3_2590 are separated by 77 nucleotides Shewana3_2590 and Shewana3_2591 overlap by 14 nucleotides Shewana3_2591 and Shewana3_2592 are separated by 374 nucleotides Shewana3_2592 and Shewana3_2593 are separated by 137 nucleotides
Shewana3_2588: Shewana3_2588 - phosphate-starvation-inducible E (RefSeq), at 3,093,869 to 3,094,273
_2588
Shewana3_2589: Shewana3_2589 - type IV pilus assembly PilZ (RefSeq), at 3,094,425 to 3,094,727
_2589
Shewana3_2590: Shewana3_2590 - hypothetical protein (RefSeq), at 3,094,805 to 3,095,473
_2590
Shewana3_2591: Shewana3_2591 - RepA domain-containing protein (RefSeq), at 3,095,460 to 3,095,801
_2591
Shewana3_2592: Shewana3_2592 - hypothetical protein (RefSeq), at 3,096,176 to 3,096,334
_2592
Shewana3_2593: Shewana3_2593 - signal transduction histidine kinase, LytS (RefSeq), at 3,096,472 to 3,098,154
_2593
Position (kb)
3094
3095
3096 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3094.124 kb on - strand, within Shewana3_2588 at 3094.300 kb on + strand at 3094.323 kb on - strand at 3094.497 kb on + strand, within Shewana3_2589 at 3094.505 kb on - strand, within Shewana3_2589 at 3094.530 kb on - strand, within Shewana3_2589 at 3094.686 kb on - strand, within Shewana3_2589 at 3094.686 kb on - strand, within Shewana3_2589 at 3094.760 kb on + strand at 3094.760 kb on + strand at 3095.074 kb on + strand, within Shewana3_2590 at 3095.077 kb on - strand, within Shewana3_2590 at 3095.127 kb on + strand, within Shewana3_2590 at 3095.203 kb on + strand, within Shewana3_2590 at 3095.220 kb on + strand, within Shewana3_2590 at 3095.220 kb on + strand, within Shewana3_2590 at 3095.228 kb on - strand, within Shewana3_2590 at 3095.356 kb on + strand, within Shewana3_2590 at 3095.803 kb on - strand at 3095.879 kb on + strand at 3096.172 kb on - strand at 3096.288 kb on + strand, within Shewana3_2592 at 3096.291 kb on + strand, within Shewana3_2592
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0001 mg/ml remove 3,094,124 - Shewana3_2588 0.63 -1.8 3,094,300 + +0.7 3,094,323 - +0.7 3,094,497 + Shewana3_2589 0.24 +1.0 3,094,505 - Shewana3_2589 0.26 +0.1 3,094,530 - Shewana3_2589 0.35 +1.0 3,094,686 - Shewana3_2589 0.86 +2.0 3,094,686 - Shewana3_2589 0.86 -2.5 3,094,760 + -1.0 3,094,760 + +0.7 3,095,074 + Shewana3_2590 0.40 -0.3 3,095,077 - Shewana3_2590 0.41 +1.0 3,095,127 + Shewana3_2590 0.48 -1.9 3,095,203 + Shewana3_2590 0.59 -0.6 3,095,220 + Shewana3_2590 0.62 +0.1 3,095,220 + Shewana3_2590 0.62 -1.3 3,095,228 - Shewana3_2590 0.63 +2.0 3,095,356 + Shewana3_2590 0.82 +1.0 3,095,803 - +2.0 3,095,879 + -0.3 3,096,172 - +0.2 3,096,288 + Shewana3_2592 0.70 +1.8 3,096,291 + Shewana3_2592 0.72 +0.4
Or see this region's nucleotide sequence