Experiment: Chloramphenicol 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2580 and Shewana3_2581 are separated by 165 nucleotides Shewana3_2581 and Shewana3_2582 are separated by 130 nucleotides Shewana3_2582 and lpxK overlap by 11 nucleotides lpxK and Shewana3_2584 are separated by 0 nucleotides
Shewana3_2580: Shewana3_2580 - hypothetical protein (RefSeq), at 3,084,815 to 3,085,504
_2580
Shewana3_2581: Shewana3_2581 - putative lipoprotein (RefSeq), at 3,085,670 to 3,086,134
_2581
Shewana3_2582: Shewana3_2582 - hypothetical protein (RefSeq), at 3,086,265 to 3,086,444
_2582
Shewana3_2583: lpxK - tetraacyldisaccharide 4'-kinase (RefSeq), at 3,086,434 to 3,087,441
lpxK
Shewana3_2584: Shewana3_2584 - lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA (RefSeq), at 3,087,442 to 3,089,244
_2584
Position (kb) 3086
3087
3088 Strain fitness (log2 ratio) -1
0
1 at 3085.574 kb on - strand at 3085.664 kb on - strand at 3085.707 kb on + strand at 3085.803 kb on + strand, within Shewana3_2581 at 3085.940 kb on - strand, within Shewana3_2581 at 3086.128 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0001 mg/ml remove 3,085,574 - +0.7 3,085,664 - -0.6 3,085,707 + -1.0 3,085,803 + Shewana3_2581 0.29 -0.6 3,085,940 - Shewana3_2581 0.58 -1.3 3,086,128 + +0.4
Or see this region's nucleotide sequence