Experiment: Chloramphenicol 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2500 and Shewana3_2501 are separated by 378 nucleotides Shewana3_2501 and Shewana3_2502 are separated by 55 nucleotides
Shewana3_2500: Shewana3_2500 - TonB-dependent receptor (RefSeq), at 2,990,199 to 2,992,472
_2500
Shewana3_2501: Shewana3_2501 - cyclic nucleotide-binding protein (RefSeq), at 2,992,851 to 2,993,531
_2501
Shewana3_2502: Shewana3_2502 - hypothetical protein (RefSeq), at 2,993,587 to 2,994,771
_2502
Position (kb)
2992
2993
2994 Strain fitness (log2 ratio)
-1
0
1
2 at 2991.880 kb on - strand, within Shewana3_2500 at 2992.183 kb on + strand, within Shewana3_2500 at 2992.199 kb on - strand, within Shewana3_2500 at 2992.344 kb on - strand at 2992.388 kb on - strand at 2992.509 kb on - strand at 2992.738 kb on - strand at 2992.879 kb on + strand at 2992.904 kb on - strand at 2992.980 kb on + strand, within Shewana3_2501 at 2993.014 kb on - strand, within Shewana3_2501 at 2993.160 kb on + strand, within Shewana3_2501 at 2993.380 kb on + strand, within Shewana3_2501 at 2993.380 kb on + strand, within Shewana3_2501 at 2993.445 kb on - strand, within Shewana3_2501 at 2993.452 kb on + strand, within Shewana3_2501 at 2993.524 kb on + strand at 2993.974 kb on + strand, within Shewana3_2502 at 2994.030 kb on - strand, within Shewana3_2502 at 2994.101 kb on + strand, within Shewana3_2502 at 2994.112 kb on - strand, within Shewana3_2502 at 2994.168 kb on - strand, within Shewana3_2502 at 2994.427 kb on - strand, within Shewana3_2502
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0001 mg/ml remove 2,991,880 - Shewana3_2500 0.74 -0.8 2,992,183 + Shewana3_2500 0.87 +1.0 2,992,199 - Shewana3_2500 0.88 +0.0 2,992,344 - +0.8 2,992,388 - -0.2 2,992,509 - -0.1 2,992,738 - -0.0 2,992,879 + +1.2 2,992,904 - +0.2 2,992,980 + Shewana3_2501 0.19 -0.8 2,993,014 - Shewana3_2501 0.24 -1.5 2,993,160 + Shewana3_2501 0.45 -0.7 2,993,380 + Shewana3_2501 0.78 -1.7 2,993,380 + Shewana3_2501 0.78 +0.1 2,993,445 - Shewana3_2501 0.87 +1.0 2,993,452 + Shewana3_2501 0.88 -0.2 2,993,524 + +0.8 2,993,974 + Shewana3_2502 0.33 -1.0 2,994,030 - Shewana3_2502 0.37 +0.7 2,994,101 + Shewana3_2502 0.43 +2.0 2,994,112 - Shewana3_2502 0.44 +0.7 2,994,168 - Shewana3_2502 0.49 +0.1 2,994,427 - Shewana3_2502 0.71 -0.6
Or see this region's nucleotide sequence