Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2498
Experiment: Chloramphenicol 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Chloramphenicol 0.0001 mg/ml |
---|---|---|---|---|---|
remove | |||||
2,988,136 | - | Shewana3_2497 | 0.32 | -0.9 | |
2,988,246 | - | Shewana3_2497 | 0.41 | +0.9 | |
2,988,319 | - | Shewana3_2497 | 0.46 | -0.6 | |
2,988,347 | - | Shewana3_2497 | 0.49 | +0.3 | |
2,989,393 | - | Shewana3_2498 | 0.43 | +1.2 | |
2,989,624 | - | Shewana3_2498 | 0.77 | +1.0 | |
2,989,676 | + | Shewana3_2498 | 0.85 | +2.0 | |
2,989,751 | - | +0.1 | |||
2,989,776 | + | -0.6 | |||
2,989,854 | + | -0.3 | |||
2,989,930 | - | Shewana3_2499 | 0.33 | +2.0 | |
2,989,942 | - | Shewana3_2499 | 0.38 | +1.2 | |
2,990,600 | - | Shewana3_2500 | 0.18 | +0.7 | |
2,990,600 | - | Shewana3_2500 | 0.18 | -0.2 | |
2,990,600 | - | Shewana3_2500 | 0.18 | +0.3 | |
2,990,610 | - | Shewana3_2500 | 0.18 | +0.5 | |
2,990,759 | - | Shewana3_2500 | 0.25 | -0.0 |
Or see this region's nucleotide sequence