Experiment: Chloramphenicol 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2493 and Shewana3_2494 are separated by 34 nucleotides Shewana3_2494 and Shewana3_2495 are separated by 128 nucleotides Shewana3_2495 and Shewana3_2496 are separated by 50 nucleotides
Shewana3_2493: Shewana3_2493 - GCN5-related N-acetyltransferase (RefSeq), at 2,984,878 to 2,985,375
_2493
Shewana3_2494: Shewana3_2494 - nitroreductase (RefSeq), at 2,985,410 to 2,985,958
_2494
Shewana3_2495: Shewana3_2495 - DoxX family protein (RefSeq), at 2,986,087 to 2,986,680
_2495
Shewana3_2496: Shewana3_2496 - hypothetical protein (RefSeq), at 2,986,731 to 2,987,603
_2496
Position (kb)
2986
2987 Strain fitness (log2 ratio)
-1
0
1
2 at 2985.177 kb on - strand, within Shewana3_2493 at 2985.235 kb on - strand, within Shewana3_2493 at 2985.351 kb on + strand at 2985.409 kb on + strand at 2985.466 kb on + strand, within Shewana3_2494 at 2985.672 kb on - strand, within Shewana3_2494 at 2985.694 kb on + strand, within Shewana3_2494 at 2985.781 kb on + strand, within Shewana3_2494 at 2985.797 kb on + strand, within Shewana3_2494 at 2985.799 kb on - strand, within Shewana3_2494 at 2985.799 kb on - strand, within Shewana3_2494 at 2985.799 kb on - strand, within Shewana3_2494 at 2985.805 kb on - strand, within Shewana3_2494 at 2985.805 kb on - strand, within Shewana3_2494 at 2986.105 kb on - strand at 2986.150 kb on + strand, within Shewana3_2495 at 2986.220 kb on - strand, within Shewana3_2495 at 2986.239 kb on - strand, within Shewana3_2495 at 2986.737 kb on - strand at 2986.936 kb on - strand, within Shewana3_2496 at 2986.947 kb on - strand, within Shewana3_2496 at 2986.973 kb on + strand, within Shewana3_2496 at 2986.988 kb on + strand, within Shewana3_2496 at 2986.988 kb on + strand, within Shewana3_2496 at 2986.988 kb on + strand, within Shewana3_2496 at 2986.996 kb on - strand, within Shewana3_2496 at 2987.042 kb on + strand, within Shewana3_2496 at 2987.521 kb on - strand at 2987.615 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0001 mg/ml remove 2,985,177 - Shewana3_2493 0.60 +0.0 2,985,235 - Shewana3_2493 0.72 +1.0 2,985,351 + +1.3 2,985,409 + +1.0 2,985,466 + Shewana3_2494 0.10 +0.8 2,985,672 - Shewana3_2494 0.48 -0.4 2,985,694 + Shewana3_2494 0.52 -1.6 2,985,781 + Shewana3_2494 0.68 -0.5 2,985,797 + Shewana3_2494 0.70 -0.7 2,985,799 - Shewana3_2494 0.71 -0.1 2,985,799 - Shewana3_2494 0.71 +0.0 2,985,799 - Shewana3_2494 0.71 +0.3 2,985,805 - Shewana3_2494 0.72 +0.4 2,985,805 - Shewana3_2494 0.72 +1.2 2,986,105 - +0.4 2,986,150 + Shewana3_2495 0.11 -0.7 2,986,220 - Shewana3_2495 0.22 -1.3 2,986,239 - Shewana3_2495 0.26 -1.7 2,986,737 - -0.6 2,986,936 - Shewana3_2496 0.23 -0.6 2,986,947 - Shewana3_2496 0.25 +1.0 2,986,973 + Shewana3_2496 0.28 -0.0 2,986,988 + Shewana3_2496 0.29 -0.3 2,986,988 + Shewana3_2496 0.29 -0.3 2,986,988 + Shewana3_2496 0.29 +2.0 2,986,996 - Shewana3_2496 0.30 +1.3 2,987,042 + Shewana3_2496 0.36 +2.0 2,987,521 - +2.0 2,987,615 + +0.8
Or see this region's nucleotide sequence