Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2495

Experiment: Chloramphenicol 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2493 and Shewana3_2494 are separated by 34 nucleotidesShewana3_2494 and Shewana3_2495 are separated by 128 nucleotidesShewana3_2495 and Shewana3_2496 are separated by 50 nucleotides Shewana3_2493: Shewana3_2493 - GCN5-related N-acetyltransferase (RefSeq), at 2,984,878 to 2,985,375 _2493 Shewana3_2494: Shewana3_2494 - nitroreductase (RefSeq), at 2,985,410 to 2,985,958 _2494 Shewana3_2495: Shewana3_2495 - DoxX family protein (RefSeq), at 2,986,087 to 2,986,680 _2495 Shewana3_2496: Shewana3_2496 - hypothetical protein (RefSeq), at 2,986,731 to 2,987,603 _2496 Position (kb) 2986 2987Strain fitness (log2 ratio) -1 0 1 2at 2985.177 kb on - strand, within Shewana3_2493at 2985.235 kb on - strand, within Shewana3_2493at 2985.351 kb on + strandat 2985.409 kb on + strandat 2985.466 kb on + strand, within Shewana3_2494at 2985.672 kb on - strand, within Shewana3_2494at 2985.694 kb on + strand, within Shewana3_2494at 2985.781 kb on + strand, within Shewana3_2494at 2985.797 kb on + strand, within Shewana3_2494at 2985.799 kb on - strand, within Shewana3_2494at 2985.799 kb on - strand, within Shewana3_2494at 2985.799 kb on - strand, within Shewana3_2494at 2985.805 kb on - strand, within Shewana3_2494at 2985.805 kb on - strand, within Shewana3_2494at 2986.105 kb on - strandat 2986.150 kb on + strand, within Shewana3_2495at 2986.220 kb on - strand, within Shewana3_2495at 2986.239 kb on - strand, within Shewana3_2495at 2986.737 kb on - strandat 2986.936 kb on - strand, within Shewana3_2496at 2986.947 kb on - strand, within Shewana3_2496at 2986.973 kb on + strand, within Shewana3_2496at 2986.988 kb on + strand, within Shewana3_2496at 2986.988 kb on + strand, within Shewana3_2496at 2986.988 kb on + strand, within Shewana3_2496at 2986.996 kb on - strand, within Shewana3_2496at 2987.042 kb on + strand, within Shewana3_2496at 2987.521 kb on - strandat 2987.615 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloramphenicol 0.0001 mg/ml
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2,985,177 - Shewana3_2493 0.60 +0.0
2,985,235 - Shewana3_2493 0.72 +1.0
2,985,351 + +1.3
2,985,409 + +1.0
2,985,466 + Shewana3_2494 0.10 +0.8
2,985,672 - Shewana3_2494 0.48 -0.4
2,985,694 + Shewana3_2494 0.52 -1.6
2,985,781 + Shewana3_2494 0.68 -0.5
2,985,797 + Shewana3_2494 0.70 -0.7
2,985,799 - Shewana3_2494 0.71 -0.1
2,985,799 - Shewana3_2494 0.71 +0.0
2,985,799 - Shewana3_2494 0.71 +0.3
2,985,805 - Shewana3_2494 0.72 +0.4
2,985,805 - Shewana3_2494 0.72 +1.2
2,986,105 - +0.4
2,986,150 + Shewana3_2495 0.11 -0.7
2,986,220 - Shewana3_2495 0.22 -1.3
2,986,239 - Shewana3_2495 0.26 -1.7
2,986,737 - -0.6
2,986,936 - Shewana3_2496 0.23 -0.6
2,986,947 - Shewana3_2496 0.25 +1.0
2,986,973 + Shewana3_2496 0.28 -0.0
2,986,988 + Shewana3_2496 0.29 -0.3
2,986,988 + Shewana3_2496 0.29 -0.3
2,986,988 + Shewana3_2496 0.29 +2.0
2,986,996 - Shewana3_2496 0.30 +1.3
2,987,042 + Shewana3_2496 0.36 +2.0
2,987,521 - +2.0
2,987,615 + +0.8

Or see this region's nucleotide sequence