Experiment: Chloramphenicol 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2473 and Shewana3_2474 are separated by 287 nucleotides Shewana3_2474 and Shewana3_2475 are separated by 230 nucleotides Shewana3_2475 and Shewana3_2476 are separated by 128 nucleotides Shewana3_2476 and Shewana3_2477 are separated by 287 nucleotides
Shewana3_2473: Shewana3_2473 - succinate dehydrogenase (ubiquinone) (RefSeq), at 2,959,864 to 2,960,595
_2473
Shewana3_2474: Shewana3_2474 - hypothetical protein (RefSeq), at 2,960,883 to 2,961,149
_2474
Shewana3_2475: Shewana3_2475 - AMP-binding domain protein (RefSeq), at 2,961,380 to 2,963,104
_2475
Shewana3_2476: Shewana3_2476 - hypothetical protein (RefSeq), at 2,963,233 to 2,963,613
_2476
Shewana3_2477: Shewana3_2477 - hypothetical protein (RefSeq), at 2,963,901 to 2,964,362
_2477
Position (kb)
2961
2962
2963
2964 Strain fitness (log2 ratio)
-2
-1
0
1 at 2960.611 kb on + strand at 2961.009 kb on + strand, within Shewana3_2474 at 2961.053 kb on + strand, within Shewana3_2474 at 2961.504 kb on - strand at 2961.598 kb on + strand, within Shewana3_2475 at 2961.620 kb on - strand, within Shewana3_2475 at 2961.630 kb on - strand, within Shewana3_2475 at 2961.923 kb on + strand, within Shewana3_2475 at 2962.027 kb on - strand, within Shewana3_2475 at 2962.059 kb on - strand, within Shewana3_2475 at 2962.120 kb on - strand, within Shewana3_2475 at 2962.207 kb on + strand, within Shewana3_2475 at 2962.207 kb on + strand, within Shewana3_2475 at 2962.215 kb on - strand, within Shewana3_2475 at 2962.283 kb on + strand, within Shewana3_2475 at 2962.291 kb on - strand, within Shewana3_2475 at 2962.472 kb on - strand, within Shewana3_2475 at 2962.630 kb on + strand, within Shewana3_2475 at 2962.638 kb on - strand, within Shewana3_2475 at 2962.638 kb on - strand, within Shewana3_2475 at 2962.874 kb on + strand, within Shewana3_2475 at 2962.963 kb on + strand at 2962.999 kb on + strand at 2963.218 kb on + strand at 2963.274 kb on + strand, within Shewana3_2476 at 2963.282 kb on - strand, within Shewana3_2476 at 2963.594 kb on - strand at 2963.740 kb on - strand at 2963.812 kb on + strand at 2963.959 kb on - strand, within Shewana3_2477
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0001 mg/ml remove 2,960,611 + +0.5 2,961,009 + Shewana3_2474 0.47 -0.1 2,961,053 + Shewana3_2474 0.64 -1.0 2,961,504 - +1.1 2,961,598 + Shewana3_2475 0.13 -0.9 2,961,620 - Shewana3_2475 0.14 +0.2 2,961,630 - Shewana3_2475 0.14 -0.5 2,961,923 + Shewana3_2475 0.31 +0.5 2,962,027 - Shewana3_2475 0.38 -0.4 2,962,059 - Shewana3_2475 0.39 -1.1 2,962,120 - Shewana3_2475 0.43 +1.1 2,962,207 + Shewana3_2475 0.48 -2.2 2,962,207 + Shewana3_2475 0.48 +0.1 2,962,215 - Shewana3_2475 0.48 -0.9 2,962,283 + Shewana3_2475 0.52 -0.3 2,962,291 - Shewana3_2475 0.53 -0.2 2,962,472 - Shewana3_2475 0.63 +0.3 2,962,630 + Shewana3_2475 0.72 +0.5 2,962,638 - Shewana3_2475 0.73 -0.4 2,962,638 - Shewana3_2475 0.73 +1.1 2,962,874 + Shewana3_2475 0.87 -0.5 2,962,963 + +1.5 2,962,999 + +0.5 2,963,218 + +1.0 2,963,274 + Shewana3_2476 0.11 -0.3 2,963,282 - Shewana3_2476 0.13 -0.7 2,963,594 - -0.5 2,963,740 - +0.5 2,963,812 + -0.8 2,963,959 - Shewana3_2477 0.13 +1.5
Or see this region's nucleotide sequence