Experiment: Chloramphenicol 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2418 and Shewana3_2419 are separated by 85 nucleotides Shewana3_2419 and Shewana3_2420 are separated by 112 nucleotides Shewana3_2420 and Shewana3_2421 are separated by 81 nucleotides
Shewana3_2418: Shewana3_2418 - Ppx/GppA phosphatase (RefSeq), at 2,900,957 to 2,902,513
_2418
Shewana3_2419: Shewana3_2419 - Ion transport protein (RefSeq), at 2,902,599 to 2,903,468
_2419
Shewana3_2420: Shewana3_2420 - hypothetical protein (RefSeq), at 2,903,581 to 2,904,141
_2420
Shewana3_2421: Shewana3_2421 - hypothetical protein (RefSeq), at 2,904,223 to 2,904,831
_2421
Position (kb)
2902
2903
2904 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2901.909 kb on + strand, within Shewana3_2418 at 2901.910 kb on - strand, within Shewana3_2418 at 2901.927 kb on - strand, within Shewana3_2418 at 2901.927 kb on - strand, within Shewana3_2418 at 2902.027 kb on + strand, within Shewana3_2418 at 2902.346 kb on - strand, within Shewana3_2418 at 2902.435 kb on - strand at 2902.891 kb on + strand, within Shewana3_2419 at 2903.017 kb on + strand, within Shewana3_2419 at 2903.039 kb on + strand, within Shewana3_2419 at 2903.130 kb on - strand, within Shewana3_2419 at 2903.219 kb on + strand, within Shewana3_2419 at 2903.227 kb on - strand, within Shewana3_2419 at 2903.347 kb on - strand, within Shewana3_2419 at 2903.347 kb on - strand, within Shewana3_2419 at 2903.347 kb on - strand, within Shewana3_2419 at 2903.638 kb on - strand, within Shewana3_2420 at 2903.661 kb on + strand, within Shewana3_2420 at 2904.018 kb on + strand, within Shewana3_2420 at 2904.023 kb on + strand, within Shewana3_2420 at 2904.468 kb on - strand, within Shewana3_2421
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0001 mg/ml remove 2,901,909 + Shewana3_2418 0.61 -1.3 2,901,910 - Shewana3_2418 0.61 +1.1 2,901,927 - Shewana3_2418 0.62 +0.2 2,901,927 - Shewana3_2418 0.62 -2.0 2,902,027 + Shewana3_2418 0.69 -2.0 2,902,346 - Shewana3_2418 0.89 -0.2 2,902,435 - +2.1 2,902,891 + Shewana3_2419 0.34 -0.2 2,903,017 + Shewana3_2419 0.48 +0.8 2,903,039 + Shewana3_2419 0.51 +2.1 2,903,130 - Shewana3_2419 0.61 +1.6 2,903,219 + Shewana3_2419 0.71 +1.1 2,903,227 - Shewana3_2419 0.72 -0.4 2,903,347 - Shewana3_2419 0.86 -1.1 2,903,347 - Shewana3_2419 0.86 +1.2 2,903,347 - Shewana3_2419 0.86 +1.5 2,903,638 - Shewana3_2420 0.10 -0.9 2,903,661 + Shewana3_2420 0.14 -0.4 2,904,018 + Shewana3_2420 0.78 +1.1 2,904,023 + Shewana3_2420 0.79 -0.5 2,904,468 - Shewana3_2421 0.40 -1.7
Or see this region's nucleotide sequence