Experiment: Chloramphenicol 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2347 and Shewana3_2348 are separated by 44 nucleotides Shewana3_2348 and Shewana3_2349 overlap by 8 nucleotides Shewana3_2349 and Shewana3_2350 are separated by 18 nucleotides Shewana3_2350 and Shewana3_2351 are separated by 60 nucleotides
Shewana3_2347: Shewana3_2347 - RND family efflux transporter MFP subunit (RefSeq), at 2,825,448 to 2,826,572
_2347
Shewana3_2348: Shewana3_2348 - cytochrome c biogenesis protein, transmembrane region (RefSeq), at 2,826,617 to 2,827,315
_2348
Shewana3_2349: Shewana3_2349 - hypothetical protein (RefSeq), at 2,827,308 to 2,827,841
_2349
Shewana3_2350: Shewana3_2350 - redox-active disulfide protein 2 (RefSeq), at 2,827,860 to 2,828,102
_2350
Shewana3_2351: Shewana3_2351 - ArsR family transcriptional regulator (RefSeq), at 2,828,163 to 2,828,471
_2351
Position (kb)
2826
2827
2828 Strain fitness (log2 ratio)
-1
0
1
2 at 2826.034 kb on + strand, within Shewana3_2347 at 2826.069 kb on + strand, within Shewana3_2347 at 2826.069 kb on + strand, within Shewana3_2347 at 2826.102 kb on - strand, within Shewana3_2347 at 2826.292 kb on - strand, within Shewana3_2347 at 2826.317 kb on + strand, within Shewana3_2347 at 2826.594 kb on - strand at 2826.930 kb on - strand, within Shewana3_2348 at 2827.176 kb on - strand, within Shewana3_2348 at 2827.277 kb on + strand at 2827.430 kb on + strand, within Shewana3_2349 at 2827.458 kb on + strand, within Shewana3_2349 at 2827.500 kb on + strand, within Shewana3_2349 at 2827.656 kb on - strand, within Shewana3_2349 at 2827.782 kb on + strand, within Shewana3_2349 at 2827.782 kb on + strand, within Shewana3_2349 at 2827.782 kb on + strand, within Shewana3_2349 at 2827.806 kb on + strand at 2828.079 kb on - strand at 2828.314 kb on + strand, within Shewana3_2351
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0001 mg/ml remove 2,826,034 + Shewana3_2347 0.52 +0.7 2,826,069 + Shewana3_2347 0.55 -0.8 2,826,069 + Shewana3_2347 0.55 -0.1 2,826,102 - Shewana3_2347 0.58 -0.9 2,826,292 - Shewana3_2347 0.75 -0.9 2,826,317 + Shewana3_2347 0.77 +1.2 2,826,594 - -1.5 2,826,930 - Shewana3_2348 0.45 +0.6 2,827,176 - Shewana3_2348 0.80 -1.7 2,827,277 + -1.3 2,827,430 + Shewana3_2349 0.23 +2.2 2,827,458 + Shewana3_2349 0.28 +2.2 2,827,500 + Shewana3_2349 0.36 +0.7 2,827,656 - Shewana3_2349 0.65 -1.1 2,827,782 + Shewana3_2349 0.89 +0.7 2,827,782 + Shewana3_2349 0.89 +2.2 2,827,782 + Shewana3_2349 0.89 -0.3 2,827,806 + -0.1 2,828,079 - +0.2 2,828,314 + Shewana3_2351 0.49 -0.9
Or see this region's nucleotide sequence