Experiment: Chloramphenicol 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2326 and Shewana3_2327 are separated by 101 nucleotides Shewana3_2327 and Shewana3_2328 are separated by 309 nucleotides Shewana3_2328 and Shewana3_2329 are separated by 132 nucleotides
Shewana3_2326: Shewana3_2326 - hypothetical protein (RefSeq), at 2,802,927 to 2,803,856
_2326
Shewana3_2327: Shewana3_2327 - transcriptional regulator (RefSeq), at 2,803,958 to 2,804,908
_2327
Shewana3_2328: Shewana3_2328 - hypothetical protein (RefSeq), at 2,805,218 to 2,805,493
_2328
Shewana3_2329: Shewana3_2329 - major facilitator transporter (RefSeq), at 2,805,626 to 2,806,864
_2329
Position (kb)
2803
2804
2805 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2803.014 kb on + strand at 2803.022 kb on - strand, within Shewana3_2326 at 2803.022 kb on - strand, within Shewana3_2326 at 2803.041 kb on + strand, within Shewana3_2326 at 2803.085 kb on + strand, within Shewana3_2326 at 2803.150 kb on + strand, within Shewana3_2326 at 2803.214 kb on - strand, within Shewana3_2326 at 2803.245 kb on - strand, within Shewana3_2326 at 2803.291 kb on + strand, within Shewana3_2326 at 2803.498 kb on + strand, within Shewana3_2326 at 2803.522 kb on - strand, within Shewana3_2326 at 2803.634 kb on + strand, within Shewana3_2326 at 2803.671 kb on - strand, within Shewana3_2326 at 2803.671 kb on - strand, within Shewana3_2326 at 2803.681 kb on - strand, within Shewana3_2326 at 2803.681 kb on - strand, within Shewana3_2326 at 2804.028 kb on - strand at 2804.197 kb on - strand, within Shewana3_2327 at 2804.197 kb on - strand, within Shewana3_2327 at 2804.197 kb on - strand, within Shewana3_2327 at 2804.295 kb on + strand, within Shewana3_2327 at 2804.449 kb on - strand, within Shewana3_2327 at 2804.571 kb on - strand, within Shewana3_2327 at 2804.601 kb on - strand, within Shewana3_2327 at 2804.601 kb on - strand, within Shewana3_2327 at 2804.602 kb on - strand, within Shewana3_2327 at 2804.778 kb on + strand, within Shewana3_2327 at 2805.300 kb on - strand, within Shewana3_2328 at 2805.305 kb on - strand, within Shewana3_2328 at 2805.549 kb on - strand at 2805.742 kb on + strand at 2805.750 kb on - strand, within Shewana3_2329 at 2805.888 kb on - strand, within Shewana3_2329
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0001 mg/ml remove 2,803,014 + -0.8 2,803,022 - Shewana3_2326 0.10 -1.1 2,803,022 - Shewana3_2326 0.10 -0.6 2,803,041 + Shewana3_2326 0.12 +2.2 2,803,085 + Shewana3_2326 0.17 +1.2 2,803,150 + Shewana3_2326 0.24 -0.3 2,803,214 - Shewana3_2326 0.31 -0.5 2,803,245 - Shewana3_2326 0.34 -0.9 2,803,291 + Shewana3_2326 0.39 +0.7 2,803,498 + Shewana3_2326 0.61 -0.8 2,803,522 - Shewana3_2326 0.64 +0.2 2,803,634 + Shewana3_2326 0.76 +0.7 2,803,671 - Shewana3_2326 0.80 +0.4 2,803,671 - Shewana3_2326 0.80 -0.8 2,803,681 - Shewana3_2326 0.81 +0.7 2,803,681 - Shewana3_2326 0.81 +0.7 2,804,028 - +2.2 2,804,197 - Shewana3_2327 0.25 -1.3 2,804,197 - Shewana3_2327 0.25 +0.7 2,804,197 - Shewana3_2327 0.25 +0.7 2,804,295 + Shewana3_2327 0.35 -1.8 2,804,449 - Shewana3_2327 0.52 +1.2 2,804,571 - Shewana3_2327 0.64 +0.2 2,804,601 - Shewana3_2327 0.68 +2.2 2,804,601 - Shewana3_2327 0.68 +2.2 2,804,602 - Shewana3_2327 0.68 -0.1 2,804,778 + Shewana3_2327 0.86 +2.2 2,805,300 - Shewana3_2328 0.30 +0.7 2,805,305 - Shewana3_2328 0.32 -0.1 2,805,549 - -0.2 2,805,742 + +1.3 2,805,750 - Shewana3_2329 0.10 -0.9 2,805,888 - Shewana3_2329 0.21 +0.2
Or see this region's nucleotide sequence