Experiment: Chloramphenicol 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2299 and Shewana3_2300 are separated by 55 nucleotides Shewana3_2300 and Shewana3_2301 are separated by 137 nucleotides Shewana3_2301 and Shewana3_2302 are separated by 262 nucleotides
Shewana3_2299: Shewana3_2299 - hypothetical protein (RefSeq), at 2,762,417 to 2,763,352
_2299
Shewana3_2300: Shewana3_2300 - GCN5-related N-acetyltransferase (RefSeq), at 2,763,408 to 2,763,866
_2300
Shewana3_2301: Shewana3_2301 - peptidase S9 prolyl oligopeptidase (RefSeq), at 2,764,004 to 2,766,067
_2301
Shewana3_2302: Shewana3_2302 - fumarase (RefSeq), at 2,766,330 to 2,767,874
_2302
Position (kb)
2764
2765
2766
2767 Strain fitness (log2 ratio)
-1
0
1
2 at 2763.599 kb on - strand, within Shewana3_2300 at 2763.637 kb on + strand, within Shewana3_2300 at 2763.645 kb on - strand, within Shewana3_2300 at 2763.705 kb on + strand, within Shewana3_2300 at 2763.713 kb on - strand, within Shewana3_2300 at 2763.770 kb on + strand, within Shewana3_2300 at 2763.773 kb on - strand, within Shewana3_2300 at 2763.780 kb on + strand, within Shewana3_2300 at 2763.783 kb on - strand, within Shewana3_2300 at 2763.807 kb on - strand, within Shewana3_2300 at 2764.435 kb on - strand, within Shewana3_2301 at 2764.616 kb on - strand, within Shewana3_2301 at 2764.643 kb on - strand, within Shewana3_2301 at 2764.667 kb on + strand, within Shewana3_2301 at 2764.840 kb on - strand, within Shewana3_2301 at 2765.017 kb on - strand, within Shewana3_2301 at 2765.029 kb on + strand, within Shewana3_2301 at 2765.037 kb on - strand, within Shewana3_2301 at 2765.099 kb on - strand, within Shewana3_2301 at 2765.257 kb on + strand, within Shewana3_2301 at 2765.265 kb on - strand, within Shewana3_2301 at 2765.381 kb on + strand, within Shewana3_2301 at 2765.402 kb on + strand, within Shewana3_2301 at 2765.410 kb on - strand, within Shewana3_2301 at 2765.652 kb on - strand, within Shewana3_2301 at 2765.906 kb on - strand at 2765.981 kb on - strand at 2766.335 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0001 mg/ml remove 2,763,599 - Shewana3_2300 0.42 +0.6 2,763,637 + Shewana3_2300 0.50 -0.1 2,763,645 - Shewana3_2300 0.52 +0.1 2,763,705 + Shewana3_2300 0.65 -1.6 2,763,713 - Shewana3_2300 0.66 +0.0 2,763,770 + Shewana3_2300 0.79 +1.1 2,763,773 - Shewana3_2300 0.80 -1.1 2,763,780 + Shewana3_2300 0.81 -0.6 2,763,783 - Shewana3_2300 0.82 +0.8 2,763,807 - Shewana3_2300 0.87 +0.3 2,764,435 - Shewana3_2301 0.21 +1.4 2,764,616 - Shewana3_2301 0.30 +0.9 2,764,643 - Shewana3_2301 0.31 +0.6 2,764,667 + Shewana3_2301 0.32 -1.3 2,764,840 - Shewana3_2301 0.41 +0.8 2,765,017 - Shewana3_2301 0.49 +1.3 2,765,029 + Shewana3_2301 0.50 +1.3 2,765,037 - Shewana3_2301 0.50 -0.4 2,765,099 - Shewana3_2301 0.53 +0.9 2,765,257 + Shewana3_2301 0.61 +1.3 2,765,265 - Shewana3_2301 0.61 -0.7 2,765,381 + Shewana3_2301 0.67 +0.7 2,765,402 + Shewana3_2301 0.68 +2.3 2,765,410 - Shewana3_2301 0.68 +1.4 2,765,652 - Shewana3_2301 0.80 -1.1 2,765,906 - -0.7 2,765,981 - -0.4 2,766,335 - +2.0
Or see this region's nucleotide sequence