Experiment: Chloramphenicol 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2104 and Shewana3_2105 are separated by 450 nucleotides Shewana3_2105 and Shewana3_2106 are separated by 108 nucleotides Shewana3_2106 and Shewana3_2107 are separated by 223 nucleotides
Shewana3_2104: Shewana3_2104 - phage integrase family protein (RefSeq), at 2,527,441 to 2,528,736
_2104
Shewana3_2105: Shewana3_2105 - response regulator receiver modulated metal dependent phosphohydrolase (RefSeq), at 2,529,187 to 2,530,764
_2105
Shewana3_2106: Shewana3_2106 - hypothetical protein (RefSeq), at 2,530,873 to 2,531,358
_2106
Shewana3_2107: Shewana3_2107 - cytochrome c oxidase, cbb3-type, subunit I (RefSeq), at 2,531,582 to 2,533,018
_2107
Position (kb)
2529
2530
2531 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2528.526 kb on - strand, within Shewana3_2104 at 2528.902 kb on - strand at 2528.969 kb on - strand at 2529.309 kb on + strand at 2529.382 kb on - strand, within Shewana3_2105 at 2529.384 kb on + strand, within Shewana3_2105 at 2529.418 kb on + strand, within Shewana3_2105 at 2529.471 kb on + strand, within Shewana3_2105 at 2529.546 kb on - strand, within Shewana3_2105 at 2529.732 kb on - strand, within Shewana3_2105 at 2530.172 kb on + strand, within Shewana3_2105 at 2530.222 kb on - strand, within Shewana3_2105 at 2530.325 kb on - strand, within Shewana3_2105 at 2531.099 kb on - strand, within Shewana3_2106 at 2531.522 kb on + strand at 2531.522 kb on + strand at 2531.612 kb on + strand at 2531.717 kb on + strand at 2531.717 kb on + strand at 2531.725 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0001 mg/ml remove 2,528,526 - Shewana3_2104 0.84 -0.5 2,528,902 - +1.1 2,528,969 - -0.0 2,529,309 + -0.3 2,529,382 - Shewana3_2105 0.12 -0.2 2,529,384 + Shewana3_2105 0.12 -1.2 2,529,418 + Shewana3_2105 0.15 +2.3 2,529,471 + Shewana3_2105 0.18 -0.3 2,529,546 - Shewana3_2105 0.23 +0.4 2,529,732 - Shewana3_2105 0.35 -0.8 2,530,172 + Shewana3_2105 0.62 -2.2 2,530,222 - Shewana3_2105 0.66 -0.0 2,530,325 - Shewana3_2105 0.72 +1.3 2,531,099 - Shewana3_2106 0.47 +0.5 2,531,522 + +0.2 2,531,522 + +0.6 2,531,612 + -0.1 2,531,717 + -0.5 2,531,717 + +0.8 2,531,725 - -1.2
Or see this region's nucleotide sequence