Experiment: Chloramphenicol 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2079 and Shewana3_2080 are separated by 277 nucleotides Shewana3_2080 and Shewana3_2081 are separated by 106 nucleotides
Shewana3_2079: Shewana3_2079 - hypothetical protein (RefSeq), at 2,488,411 to 2,489,001
_2079
Shewana3_2080: Shewana3_2080 - acetyl-CoA carboxylase, biotin carboxylase (RefSeq), at 2,489,279 to 2,491,666
_2080
Shewana3_2081: Shewana3_2081 - sugar (glycoside-Pentoside-hexuronide) transporter (RefSeq), at 2,491,773 to 2,493,218
_2081
Position (kb)
2489
2490
2491
2492 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2488.345 kb on + strand at 2488.359 kb on - strand at 2488.686 kb on + strand, within Shewana3_2079 at 2488.696 kb on + strand, within Shewana3_2079 at 2488.882 kb on - strand, within Shewana3_2079 at 2489.133 kb on + strand at 2489.230 kb on - strand at 2489.382 kb on - strand at 2489.667 kb on + strand, within Shewana3_2080 at 2489.684 kb on + strand, within Shewana3_2080 at 2489.704 kb on + strand, within Shewana3_2080 at 2490.147 kb on + strand, within Shewana3_2080 at 2490.231 kb on + strand, within Shewana3_2080 at 2490.239 kb on - strand, within Shewana3_2080 at 2490.562 kb on + strand, within Shewana3_2080 at 2490.569 kb on + strand, within Shewana3_2080 at 2490.674 kb on + strand, within Shewana3_2080 at 2490.967 kb on + strand, within Shewana3_2080 at 2490.977 kb on + strand, within Shewana3_2080 at 2490.982 kb on - strand, within Shewana3_2080 at 2490.992 kb on + strand, within Shewana3_2080 at 2491.017 kb on + strand, within Shewana3_2080 at 2491.031 kb on - strand, within Shewana3_2080 at 2491.375 kb on - strand, within Shewana3_2080 at 2491.667 kb on - strand at 2491.806 kb on - strand at 2492.007 kb on + strand, within Shewana3_2081 at 2492.060 kb on + strand, within Shewana3_2081 at 2492.263 kb on - strand, within Shewana3_2081 at 2492.476 kb on - strand, within Shewana3_2081 at 2492.572 kb on + strand, within Shewana3_2081
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0001 mg/ml remove 2,488,345 + +0.3 2,488,359 - -0.4 2,488,686 + Shewana3_2079 0.47 -1.8 2,488,696 + Shewana3_2079 0.48 +1.3 2,488,882 - Shewana3_2079 0.80 +2.3 2,489,133 + +0.4 2,489,230 - -0.3 2,489,382 - +0.3 2,489,667 + Shewana3_2080 0.16 +0.7 2,489,684 + Shewana3_2080 0.17 -3.2 2,489,704 + Shewana3_2080 0.18 +1.2 2,490,147 + Shewana3_2080 0.36 +2.3 2,490,231 + Shewana3_2080 0.40 +2.3 2,490,239 - Shewana3_2080 0.40 -1.1 2,490,562 + Shewana3_2080 0.54 +0.3 2,490,569 + Shewana3_2080 0.54 +0.6 2,490,674 + Shewana3_2080 0.58 +1.3 2,490,967 + Shewana3_2080 0.71 +0.7 2,490,977 + Shewana3_2080 0.71 -0.3 2,490,982 - Shewana3_2080 0.71 +0.0 2,490,992 + Shewana3_2080 0.72 +0.3 2,491,017 + Shewana3_2080 0.73 +0.3 2,491,031 - Shewana3_2080 0.73 +0.0 2,491,375 - Shewana3_2080 0.88 +0.1 2,491,667 - -0.5 2,491,806 - -0.5 2,492,007 + Shewana3_2081 0.16 -0.5 2,492,060 + Shewana3_2081 0.20 +0.7 2,492,263 - Shewana3_2081 0.34 -0.2 2,492,476 - Shewana3_2081 0.49 -0.9 2,492,572 + Shewana3_2081 0.55 +2.3
Or see this region's nucleotide sequence