Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1923
Experiment: Chloramphenicol 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Chloramphenicol 0.0001 mg/ml |
---|---|---|---|---|---|
remove | |||||
2,285,237 | + | Shewana3_1922 | 0.38 | +1.3 | |
2,285,460 | - | Shewana3_1922 | 0.54 | +2.3 | |
2,285,511 | + | Shewana3_1922 | 0.58 | -0.0 | |
2,285,984 | - | -1.2 | |||
2,286,405 | + | Shewana3_1923 | 0.28 | +0.3 | |
2,286,490 | + | Shewana3_1923 | 0.38 | -0.5 | |
2,286,490 | + | Shewana3_1923 | 0.38 | -1.1 | |
2,286,498 | - | Shewana3_1923 | 0.39 | -0.0 | |
2,286,502 | - | Shewana3_1923 | 0.40 | +0.3 | |
2,286,534 | - | Shewana3_1923 | 0.44 | +0.3 | |
2,286,617 | + | Shewana3_1923 | 0.54 | +0.4 | |
2,286,630 | + | Shewana3_1923 | 0.56 | +0.5 | |
2,286,847 | - | Shewana3_1923 | 0.82 | +1.3 | |
2,286,877 | - | Shewana3_1923 | 0.86 | +1.3 | |
2,286,922 | + | -2.3 | |||
2,287,086 | - | -0.3 | |||
2,287,111 | + | -0.0 | |||
2,287,199 | + | +0.7 | |||
2,287,406 | + | +0.3 | |||
2,287,437 | - | -1.5 | |||
2,287,587 | - | Shewana3_1924 | 0.14 | +1.0 | |
2,287,666 | - | Shewana3_1924 | 0.18 | +0.2 | |
2,287,825 | - | Shewana3_1924 | 0.24 | -1.2 | |
2,287,945 | - | Shewana3_1924 | 0.29 | +0.5 |
Or see this region's nucleotide sequence