Experiment: Chloramphenicol 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1905 and Shewana3_1906 are separated by 28 nucleotides Shewana3_1906 and Shewana3_1907 are separated by 82 nucleotides Shewana3_1907 and Shewana3_1908 are separated by 19 nucleotides
Shewana3_1905: Shewana3_1905 - hypothetical protein (RefSeq), at 2,262,462 to 2,262,698
_1905
Shewana3_1906: Shewana3_1906 - 3-deoxy-manno-octulosonate cytidylyltransferase (RefSeq), at 2,262,727 to 2,263,464
_1906
Shewana3_1907: Shewana3_1907 - iron-containing alcohol dehydrogenase (RefSeq), at 2,263,547 to 2,264,617
_1907
Shewana3_1908: Shewana3_1908 - DegT/DnrJ/EryC1/StrS aminotransferase (RefSeq), at 2,264,637 to 2,265,824
_1908
Position (kb)
2263
2264
2265 Strain fitness (log2 ratio)
-1
0
1
2 at 2262.646 kb on - strand, within Shewana3_1905 at 2262.745 kb on - strand at 2264.044 kb on - strand, within Shewana3_1907 at 2264.054 kb on - strand, within Shewana3_1907 at 2264.105 kb on + strand, within Shewana3_1907 at 2264.161 kb on - strand, within Shewana3_1907 at 2264.166 kb on - strand, within Shewana3_1907 at 2264.408 kb on - strand, within Shewana3_1907 at 2264.408 kb on - strand, within Shewana3_1907 at 2264.408 kb on - strand, within Shewana3_1907 at 2264.432 kb on - strand, within Shewana3_1907 at 2264.531 kb on - strand at 2264.531 kb on - strand at 2264.531 kb on - strand at 2264.531 kb on - strand at 2264.531 kb on - strand at 2264.820 kb on - strand, within Shewana3_1908 at 2264.923 kb on - strand, within Shewana3_1908 at 2265.095 kb on - strand, within Shewana3_1908 at 2265.299 kb on - strand, within Shewana3_1908 at 2265.587 kb on - strand, within Shewana3_1908
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0001 mg/ml remove 2,262,646 - Shewana3_1905 0.78 -0.5 2,262,745 - +2.3 2,264,044 - Shewana3_1907 0.46 +1.6 2,264,054 - Shewana3_1907 0.47 -0.1 2,264,105 + Shewana3_1907 0.52 +2.3 2,264,161 - Shewana3_1907 0.57 +1.8 2,264,166 - Shewana3_1907 0.58 -0.5 2,264,408 - Shewana3_1907 0.80 +0.3 2,264,408 - Shewana3_1907 0.80 +0.0 2,264,408 - Shewana3_1907 0.80 +2.3 2,264,432 - Shewana3_1907 0.83 +0.4 2,264,531 - -0.5 2,264,531 - +0.3 2,264,531 - +1.3 2,264,531 - +0.7 2,264,531 - +0.8 2,264,820 - Shewana3_1908 0.15 +0.4 2,264,923 - Shewana3_1908 0.24 -0.3 2,265,095 - Shewana3_1908 0.39 +0.2 2,265,299 - Shewana3_1908 0.56 +1.2 2,265,587 - Shewana3_1908 0.80 +0.5
Or see this region's nucleotide sequence