Experiment: Chloramphenicol 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1894 and Shewana3_1895 are separated by 201 nucleotides Shewana3_1895 and Shewana3_1896 are separated by 249 nucleotides Shewana3_1896 and Shewana3_1897 are separated by 128 nucleotides
Shewana3_1894: Shewana3_1894 - surface antigen (D15) (RefSeq), at 2,246,618 to 2,248,393
_1894
Shewana3_1895: Shewana3_1895 - peptidase T2, asparaginase 2 (RefSeq), at 2,248,595 to 2,249,626
_1895
Shewana3_1896: Shewana3_1896 - signal transduction protein (RefSeq), at 2,249,876 to 2,250,292
_1896
Shewana3_1897: Shewana3_1897 - ATP-dependent helicase HrpA (RefSeq), at 2,250,421 to 2,254,302
_1897
Position (kb)
2248
2249
2250 Strain fitness (log2 ratio)
-1
0
1
2 at 2247.694 kb on + strand, within Shewana3_1894 at 2247.849 kb on - strand, within Shewana3_1894 at 2247.864 kb on - strand, within Shewana3_1894 at 2248.047 kb on - strand, within Shewana3_1894 at 2248.174 kb on - strand, within Shewana3_1894 at 2248.222 kb on + strand at 2248.345 kb on - strand at 2248.739 kb on - strand, within Shewana3_1895 at 2248.864 kb on + strand, within Shewana3_1895 at 2249.508 kb on + strand, within Shewana3_1895 at 2249.561 kb on + strand at 2249.561 kb on + strand at 2249.621 kb on - strand at 2249.683 kb on - strand at 2249.701 kb on - strand at 2249.813 kb on + strand at 2249.947 kb on - strand, within Shewana3_1896 at 2249.952 kb on - strand, within Shewana3_1896 at 2250.171 kb on + strand, within Shewana3_1896 at 2250.223 kb on + strand, within Shewana3_1896 at 2250.301 kb on + strand at 2250.606 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0001 mg/ml remove 2,247,694 + Shewana3_1894 0.61 +2.2 2,247,849 - Shewana3_1894 0.69 +0.2 2,247,864 - Shewana3_1894 0.70 +0.2 2,248,047 - Shewana3_1894 0.80 +1.8 2,248,174 - Shewana3_1894 0.88 +2.2 2,248,222 + +2.2 2,248,345 - +0.6 2,248,739 - Shewana3_1895 0.14 +0.6 2,248,864 + Shewana3_1895 0.26 +0.1 2,249,508 + Shewana3_1895 0.88 +0.2 2,249,561 + +0.7 2,249,561 + +1.2 2,249,621 - -0.7 2,249,683 - -0.4 2,249,701 - -0.9 2,249,813 + +1.2 2,249,947 - Shewana3_1896 0.17 +2.2 2,249,952 - Shewana3_1896 0.18 -0.1 2,250,171 + Shewana3_1896 0.71 -1.3 2,250,223 + Shewana3_1896 0.83 +0.1 2,250,301 + -0.1 2,250,606 - -0.9
Or see this region's nucleotide sequence