Experiment: Chloramphenicol 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1813 and Shewana3_1814 are separated by 13 nucleotides Shewana3_1814 and Shewana3_1815 are separated by 304 nucleotides
Shewana3_1813: Shewana3_1813 - von Willebrand factor, type A (RefSeq), at 2,139,735 to 2,141,318
_1813
Shewana3_1814: Shewana3_1814 - hypothetical protein (RefSeq), at 2,141,332 to 2,141,865
_1814
Shewana3_1815: Shewana3_1815 - hypothetical protein (RefSeq), at 2,142,170 to 2,142,850
_1815
Position (kb)
2141
2142 Strain fitness (log2 ratio)
-1
0
1
2 at 2140.344 kb on + strand, within Shewana3_1813 at 2140.380 kb on + strand, within Shewana3_1813 at 2140.729 kb on + strand, within Shewana3_1813 at 2140.766 kb on + strand, within Shewana3_1813 at 2140.915 kb on - strand, within Shewana3_1813 at 2140.999 kb on + strand, within Shewana3_1813 at 2141.066 kb on - strand, within Shewana3_1813 at 2141.158 kb on + strand, within Shewana3_1813 at 2141.158 kb on + strand, within Shewana3_1813 at 2141.158 kb on + strand, within Shewana3_1813 at 2141.164 kb on - strand at 2141.166 kb on - strand at 2141.250 kb on + strand at 2141.266 kb on + strand at 2141.392 kb on + strand, within Shewana3_1814 at 2141.432 kb on + strand, within Shewana3_1814 at 2141.450 kb on - strand, within Shewana3_1814 at 2141.455 kb on + strand, within Shewana3_1814 at 2141.474 kb on - strand, within Shewana3_1814 at 2141.603 kb on + strand, within Shewana3_1814 at 2141.875 kb on + strand at 2141.980 kb on + strand at 2142.285 kb on + strand, within Shewana3_1815 at 2142.293 kb on - strand, within Shewana3_1815 at 2142.295 kb on + strand, within Shewana3_1815 at 2142.435 kb on - strand, within Shewana3_1815 at 2142.505 kb on + strand, within Shewana3_1815 at 2142.740 kb on + strand, within Shewana3_1815 at 2142.799 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0001 mg/ml remove 2,140,344 + Shewana3_1813 0.38 -0.6 2,140,380 + Shewana3_1813 0.41 +1.2 2,140,729 + Shewana3_1813 0.63 +0.5 2,140,766 + Shewana3_1813 0.65 +0.1 2,140,915 - Shewana3_1813 0.74 +2.3 2,140,999 + Shewana3_1813 0.80 -0.9 2,141,066 - Shewana3_1813 0.84 -0.0 2,141,158 + Shewana3_1813 0.90 +0.7 2,141,158 + Shewana3_1813 0.90 +0.1 2,141,158 + Shewana3_1813 0.90 +0.4 2,141,164 - +0.7 2,141,166 - +2.3 2,141,250 + +1.2 2,141,266 + +1.2 2,141,392 + Shewana3_1814 0.11 +0.7 2,141,432 + Shewana3_1814 0.19 +1.3 2,141,450 - Shewana3_1814 0.22 +1.3 2,141,455 + Shewana3_1814 0.23 +0.3 2,141,474 - Shewana3_1814 0.27 +2.3 2,141,603 + Shewana3_1814 0.51 +0.7 2,141,875 + +0.8 2,141,980 + +0.0 2,142,285 + Shewana3_1815 0.17 +1.3 2,142,293 - Shewana3_1815 0.18 +1.3 2,142,295 + Shewana3_1815 0.18 -0.6 2,142,435 - Shewana3_1815 0.39 +1.3 2,142,505 + Shewana3_1815 0.49 +1.1 2,142,740 + Shewana3_1815 0.84 +0.7 2,142,799 - -0.0
Or see this region's nucleotide sequence