Experiment: Chloramphenicol 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1629 and Shewana3_1630 are separated by 366 nucleotides Shewana3_1630 and Shewana3_1631 are separated by 190 nucleotides Shewana3_1631 and Shewana3_1632 are separated by 31 nucleotides
Shewana3_1629: Shewana3_1629 - hypothetical protein (RefSeq), at 1,917,254 to 1,917,610
_1629
Shewana3_1630: Shewana3_1630 - hypothetical protein (RefSeq), at 1,917,977 to 1,918,360
_1630
Shewana3_1631: Shewana3_1631 - hypothetical protein (RefSeq), at 1,918,551 to 1,919,516
_1631
Shewana3_1632: Shewana3_1632 - multi-sensor signal transduction histidine kinase (RefSeq), at 1,919,548 to 1,922,166
_1632
Position (kb)
1918
1919
1920 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1917.555 kb on - strand, within Shewana3_1629 at 1917.956 kb on - strand at 1917.983 kb on - strand at 1918.213 kb on + strand, within Shewana3_1630 at 1918.626 kb on - strand at 1918.925 kb on + strand, within Shewana3_1631 at 1918.932 kb on + strand, within Shewana3_1631 at 1919.344 kb on + strand, within Shewana3_1631 at 1919.471 kb on + strand at 1919.487 kb on + strand at 1920.056 kb on + strand, within Shewana3_1632 at 1920.084 kb on - strand, within Shewana3_1632 at 1920.118 kb on - strand, within Shewana3_1632 at 1920.146 kb on - strand, within Shewana3_1632 at 1920.167 kb on + strand, within Shewana3_1632 at 1920.268 kb on - strand, within Shewana3_1632 at 1920.296 kb on + strand, within Shewana3_1632 at 1920.304 kb on - strand, within Shewana3_1632 at 1920.329 kb on - strand, within Shewana3_1632
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0001 mg/ml remove 1,917,555 - Shewana3_1629 0.84 +0.5 1,917,956 - +0.5 1,917,983 - +0.5 1,918,213 + Shewana3_1630 0.61 +2.1 1,918,626 - +3.1 1,918,925 + Shewana3_1631 0.39 -1.8 1,918,932 + Shewana3_1631 0.39 -0.1 1,919,344 + Shewana3_1631 0.82 -0.6 1,919,471 + +0.2 1,919,487 + +2.1 1,920,056 + Shewana3_1632 0.19 +2.8 1,920,084 - Shewana3_1632 0.20 +1.1 1,920,118 - Shewana3_1632 0.22 -0.2 1,920,146 - Shewana3_1632 0.23 +2.1 1,920,167 + Shewana3_1632 0.24 +0.5 1,920,268 - Shewana3_1632 0.27 +2.1 1,920,296 + Shewana3_1632 0.29 +0.3 1,920,304 - Shewana3_1632 0.29 -0.2 1,920,329 - Shewana3_1632 0.30 +0.5
Or see this region's nucleotide sequence