Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1605

Experiment: Chloramphenicol 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1604 and Shewana3_1605 are separated by 187 nucleotidesShewana3_1605 and Shewana3_1606 are separated by 107 nucleotidesShewana3_1606 and Shewana3_1607 are separated by 74 nucleotides Shewana3_1604: Shewana3_1604 - hypothetical protein (RefSeq), at 1,882,924 to 1,884,747 _1604 Shewana3_1605: Shewana3_1605 - ribosome modulation factor (RefSeq), at 1,884,935 to 1,885,111 _1605 Shewana3_1606: Shewana3_1606 - 3-hydroxydecanoyl-(acyl carrier protein) dehydratase (RefSeq), at 1,885,219 to 1,885,734 _1606 Shewana3_1607: Shewana3_1607 - ATP-dependent protease (RefSeq), at 1,885,809 to 1,887,557 _1607 Position (kb) 1884 1885 1886Strain fitness (log2 ratio) -1 0 1 2 3at 1884.392 kb on + strand, within Shewana3_1604at 1884.587 kb on + strandat 1884.643 kb on + strandat 1884.918 kb on + strandat 1885.013 kb on - strand, within Shewana3_1605at 1885.051 kb on + strand, within Shewana3_1605at 1885.150 kb on + strandat 1885.215 kb on - strandat 1885.320 kb on - strand, within Shewana3_1606at 1885.386 kb on - strand, within Shewana3_1606at 1885.417 kb on - strand, within Shewana3_1606at 1885.417 kb on - strand, within Shewana3_1606at 1885.434 kb on - strand, within Shewana3_1606

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloramphenicol 0.0001 mg/ml
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1,884,392 + Shewana3_1604 0.80 +0.6
1,884,587 + +1.5
1,884,643 + +0.6
1,884,918 + -1.2
1,885,013 - Shewana3_1605 0.44 -0.6
1,885,051 + Shewana3_1605 0.66 -1.6
1,885,150 + -0.3
1,885,215 - +1.3
1,885,320 - Shewana3_1606 0.20 +1.6
1,885,386 - Shewana3_1606 0.32 +2.9
1,885,417 - Shewana3_1606 0.38 +1.6
1,885,417 - Shewana3_1606 0.38 +1.0
1,885,434 - Shewana3_1606 0.42 +1.5

Or see this region's nucleotide sequence