Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1533

Experiment: Chloramphenicol 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Chloramphenicol 0.0001 mg/ml
1,784,422	+		Shewana3_1532	0.32	-1.4
1,784,461	-		Shewana3_1532	0.35	-1.8
1,784,497	-		Shewana3_1532	0.38	-0.3
1,784,610	+		Shewana3_1532	0.48	+0.2
1,784,736	-		Shewana3_1532	0.58	-0.7
1,785,139	-				+2.1
1,785,270	+				+0.9
1,785,278	-				+2.1
1,785,306	+				+0.2
1,785,306	+				-0.3
1,785,314	-				+0.5
1,785,427	-				-0.1
1,785,476	+				-0.3
1,785,662	-		Shewana3_1533	0.11	+1.0
1,785,699	-		Shewana3_1533	0.12	+0.5
1,785,895	-		Shewana3_1533	0.19	-1.4
1,785,895	-		Shewana3_1533	0.19	+0.2
1,785,931	+		Shewana3_1533	0.21	+1.0
1,785,993	+		Shewana3_1533	0.23	+0.2
1,786,008	+		Shewana3_1533	0.23	-0.1
1,786,371	+		Shewana3_1533	0.37	-1.7
1,786,450	-		Shewana3_1533	0.40	-0.7
1,786,605	-		Shewana3_1533	0.45	+0.8
1,786,703	-		Shewana3_1533	0.49	+0.6
1,786,761	+		Shewana3_1533	0.51	+0.5
1,786,814	-		Shewana3_1533	0.53	+2.1
1,787,045	+		Shewana3_1533	0.61	-0.2
1,787,045	+		Shewana3_1533	0.61	+0.7
1,787,053	-		Shewana3_1533	0.62	-1.0
1,787,053	-		Shewana3_1533	0.62	-0.7
1,787,053	-		Shewana3_1533	0.62	-0.5
1,787,053	-		Shewana3_1533	0.62	+0.3
1,787,054	-		Shewana3_1533	0.62	+1.7
1,787,114	+				+1.1
1,787,132	+		Shewana3_1533	0.64	-0.8
1,787,224	-		Shewana3_1533	0.68	-0.4
1,787,525	+		Shewana3_1533	0.79	+1.3
1,787,810	-		Shewana3_1533	0.89	+0.5
1,787,810	-		Shewana3_1533	0.89	-0.6
1,787,923	-				+0.6
1,788,038	+				+1.1
1,788,050	-				+0.1
1,788,266	-				-1.3
1,788,273	-				+1.1
1,788,281	-				-1.8
1,788,303	+				+0.1
1,788,447	+				+0.5
1,788,514	-				+1.1
1,788,514	-				+2.1
1,788,514	-				+0.5
1,788,561	-				+2.1
1,788,564	+				-2.3
1,788,564	+				+1.1
1,788,572	-				-0.3
1,788,572	-				+2.1
1,788,605	+				+1.1
1,788,605	+				-0.5
1,788,610	+				+2.1
1,788,610	+				+1.1
1,788,610	+				-0.8
1,788,613	-				-0.6
1,788,613	-				+2.1
1,788,618	-				+1.5
1,788,618	-				-0.4
1,788,628	-				+0.1
1,788,685	+				-0.8
1,788,685	+				+1.1
1,788,693	-				+2.1
1,788,693	-				+1.1
1,788,693	-				+0.1
1,788,693	-				-0.8
1,788,695	+				+1.5
1,788,699	+				+0.5
1,788,707	-				+2.1
1,788,709	+				+0.5
1,788,709	+				+0.2
1,788,709	+				-0.9
1,788,709	+				+1.1
1,788,709	+				+1.1
1,788,709	+				-0.9
1,788,709	+				+1.1
1,788,709	+				-0.9
1,788,709	+				+1.1
1,788,709	+				-0.8
1,788,709	+				+1.6
1,788,709	+				-1.9
1,788,709	+				-0.5
1,788,709	+				+1.1
1,788,709	+				+0.5
1,788,709	+				+0.2
1,788,717	-				+1.1
1,788,717	-				+2.1
1,788,717	-				+0.5
1,788,717	-				-0.3
1,788,717	-				+2.1
1,788,717	-				+1.5
1,788,717	-				+2.1
1,788,717	-				-2.4
1,788,717	-				-0.5
1,788,717	-				+0.5
1,788,717	-				+0.3
1,788,717	-				+2.1
1,788,717	-				-0.8
1,788,767	-				+2.1
1,788,806	-		Shewana3_1534	0.10	+2.1
1,788,833	+		Shewana3_1534	0.11	+0.5
1,788,833	+		Shewana3_1534	0.11	+2.1
1,788,868	-		Shewana3_1534	0.13	+0.5
1,788,870	+		Shewana3_1534	0.13	+1.1
1,788,870	+		Shewana3_1534	0.13	+2.1
1,788,878	-		Shewana3_1534	0.13	-1.3
1,788,878	-		Shewana3_1534	0.13	-2.0
1,788,878	-		Shewana3_1534	0.13	-0.3
1,788,911	+		Shewana3_1534	0.14	-0.5
1,788,913	+		Shewana3_1534	0.14	-0.3
1,788,914	-		Shewana3_1534	0.15	+2.1
1,788,914	-		Shewana3_1534	0.15	-1.5
1,788,914	-		Shewana3_1534	0.15	-1.1
1,788,955	+		Shewana3_1534	0.16	+2.1
1,788,965	+		Shewana3_1534	0.17	+0.1
1,788,973	-		Shewana3_1534	0.17	+1.1
1,788,973	-		Shewana3_1534	0.17	+0.5