Experiment: Chloramphenicol 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1466 and Shewana3_1467 are separated by 65 nucleotides Shewana3_1467 and Shewana3_1468 are separated by 80 nucleotides Shewana3_1468 and Shewana3_1469 are separated by 114 nucleotides
Shewana3_1466: Shewana3_1466 - phosphohistidine phosphatase, SixA (RefSeq), at 1,705,617 to 1,706,087
_1466
Shewana3_1467: Shewana3_1467 - hypothetical protein (RefSeq), at 1,706,153 to 1,706,683
_1467
Shewana3_1468: Shewana3_1468 - N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase (RefSeq), at 1,706,764 to 1,707,708
_1468
Shewana3_1469: Shewana3_1469 - chorismate synthase (RefSeq), at 1,707,823 to 1,708,917
_1469
Position (kb) 1706
1707
1708 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1705.910 kb on + strand, within Shewana3_1466 at 1706.233 kb on - strand, within Shewana3_1467 at 1706.238 kb on + strand, within Shewana3_1467 at 1706.343 kb on - strand, within Shewana3_1467 at 1706.345 kb on + strand, within Shewana3_1467 at 1706.353 kb on - strand, within Shewana3_1467 at 1706.797 kb on + strand at 1706.807 kb on + strand at 1706.813 kb on - strand at 1706.815 kb on - strand at 1706.941 kb on + strand, within Shewana3_1468 at 1707.110 kb on - strand, within Shewana3_1468 at 1707.224 kb on + strand, within Shewana3_1468 at 1707.299 kb on + strand, within Shewana3_1468 at 1707.398 kb on + strand, within Shewana3_1468 at 1707.484 kb on + strand, within Shewana3_1468 at 1707.881 kb on + strand at 1707.952 kb on + strand, within Shewana3_1469 at 1708.184 kb on - strand, within Shewana3_1469 at 1708.286 kb on + strand, within Shewana3_1469 at 1708.572 kb on - strand, within Shewana3_1469
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0001 mg/ml remove 1,705,910 + Shewana3_1466 0.62 +1.0 1,706,233 - Shewana3_1467 0.15 +0.7 1,706,238 + Shewana3_1467 0.16 +0.0 1,706,343 - Shewana3_1467 0.36 +0.6 1,706,345 + Shewana3_1467 0.36 +0.7 1,706,353 - Shewana3_1467 0.38 +0.6 1,706,797 + -1.7 1,706,807 + -2.9 1,706,813 - -1.5 1,706,815 - +1.9 1,706,941 + Shewana3_1468 0.19 -2.1 1,707,110 - Shewana3_1468 0.37 +0.4 1,707,224 + Shewana3_1468 0.49 -3.3 1,707,299 + Shewana3_1468 0.57 -2.8 1,707,398 + Shewana3_1468 0.67 -1.4 1,707,484 + Shewana3_1468 0.76 -1.9 1,707,881 + +1.4 1,707,952 + Shewana3_1469 0.12 +0.6 1,708,184 - Shewana3_1469 0.33 +1.0 1,708,286 + Shewana3_1469 0.42 -1.0 1,708,572 - Shewana3_1469 0.68 +0.4
Or see this region's nucleotide sequence