Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1464

Experiment: Chloramphenicol 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Chloramphenicol 0.0001 mg/ml
1,697,119	-				-0.4
1,697,120	+				+0.2
1,697,137	-				+2.9
1,697,222	+				-0.4
1,697,222	+				+0.9
1,697,230	-				+0.3
1,697,230	-				+0.7
1,697,230	-				-1.8
1,697,272	+				+1.9
1,697,280	-				+0.6
1,697,304	+				-0.7
1,697,311	-				-0.4
1,697,312	-				+0.6
1,697,312	-				+0.5
1,697,846	-		Shewana3_1463	0.74	+0.8
1,697,893	-		Shewana3_1463	0.82	-0.4
1,698,004	-				-0.1
1,698,143	+				-2.0
1,698,197	+				-2.7
1,698,238	-				+1.9
1,698,238	-				-2.6
1,698,249	+				+0.9
1,698,249	+				-1.7
1,698,249	+				+0.3
1,698,257	-				-1.1
1,698,278	+				+0.9
1,698,286	-				+0.5
1,698,405	-				+1.9
1,698,418	-				-1.0
1,698,451	-				-1.6
1,698,476	+				-0.4
1,698,484	-				+0.3
1,698,556	+		Shewana3_1464	0.11	-0.1
1,698,579	+		Shewana3_1464	0.11	+0.9
1,698,589	+		Shewana3_1464	0.11	+1.9
1,698,594	+		Shewana3_1464	0.11	+0.3
1,698,759	+		Shewana3_1464	0.15	-0.1
1,698,759	+		Shewana3_1464	0.15	+0.9
1,698,759	+		Shewana3_1464	0.15	+0.9
1,698,766	+		Shewana3_1464	0.15	+1.9
1,698,767	-		Shewana3_1464	0.15	-1.4
1,698,767	-		Shewana3_1464	0.15	-0.6
1,698,784	+		Shewana3_1464	0.16	+0.9
1,698,784	+		Shewana3_1464	0.16	-0.4
1,698,792	-		Shewana3_1464	0.16	+0.3
1,698,792	-		Shewana3_1464	0.16	+0.9
1,698,800	+		Shewana3_1464	0.16	-1.3
1,698,827	+		Shewana3_1464	0.17	+0.9
1,698,844	-		Shewana3_1464	0.17	-2.1
1,698,915	+		Shewana3_1464	0.19	-1.9
1,698,915	+		Shewana3_1464	0.19	-1.6
1,698,915	+		Shewana3_1464	0.19	-0.8
1,698,915	+		Shewana3_1464	0.19	-1.4
1,698,915	+		Shewana3_1464	0.19	-0.3
1,698,923	-		Shewana3_1464	0.19	-0.1
1,698,923	-		Shewana3_1464	0.19	-0.9
1,698,923	-		Shewana3_1464	0.19	-1.6
1,698,923	-		Shewana3_1464	0.19	-0.7
1,698,924	+		Shewana3_1464	0.19	-0.7
1,698,932	-		Shewana3_1464	0.19	-1.6
1,698,959	+		Shewana3_1464	0.20	+0.9
1,698,959	+		Shewana3_1464	0.20	+0.1
1,698,959	+		Shewana3_1464	0.20	+0.3
1,698,991	+		Shewana3_1464	0.21	+0.9
1,699,008	+		Shewana3_1464	0.21	-0.6
1,699,052	+		Shewana3_1464	0.22	+3.5
1,699,065	+		Shewana3_1464	0.22	+0.9
1,699,088	+		Shewana3_1464	0.23	-0.5
1,699,096	+		Shewana3_1464	0.23	+0.3
1,699,096	-		Shewana3_1464	0.23	+0.3
1,699,130	+		Shewana3_1464	0.24	+0.0
1,699,209	+		Shewana3_1464	0.26	+0.1
1,699,265	+		Shewana3_1464	0.27	+0.9
1,699,300	+		Shewana3_1464	0.28	-0.9
1,699,370	+		Shewana3_1464	0.29	-1.5
1,699,416	+		Shewana3_1464	0.31	-0.1
1,699,416	+		Shewana3_1464	0.31	-0.4
1,699,416	-		Shewana3_1464	0.31	-1.3
1,699,439	-		Shewana3_1464	0.31	+1.2
1,699,466	-		Shewana3_1464	0.32	+0.9
1,699,554	-		Shewana3_1464	0.34	+0.2
1,699,578	-		Shewana3_1464	0.34	+0.5
1,699,586	-		Shewana3_1464	0.34	+0.3
1,699,688	+		Shewana3_1464	0.37	-0.7
1,699,688	+		Shewana3_1464	0.37	+0.3
1,699,688	+		Shewana3_1464	0.37	+1.9
1,699,696	-		Shewana3_1464	0.37	-2.3
1,699,716	-		Shewana3_1464	0.37	-1.2
1,699,721	+		Shewana3_1464	0.38	-0.9
1,699,774	-		Shewana3_1464	0.39	-0.7
1,699,775	-		Shewana3_1464	0.39	-1.5
1,699,775	-		Shewana3_1464	0.39	+1.4
1,699,830	+		Shewana3_1464	0.40	+0.3
1,699,850	-		Shewana3_1464	0.41	-0.5
1,699,878	-		Shewana3_1464	0.41	+0.2
1,699,878	-		Shewana3_1464	0.41	+0.3
1,699,895	+		Shewana3_1464	0.42	-0.4
1,699,895	+		Shewana3_1464	0.42	-0.7
1,699,903	-		Shewana3_1464	0.42	-1.4
1,699,903	-		Shewana3_1464	0.42	-1.5
1,699,903	-		Shewana3_1464	0.42	+1.4
1,699,918	-		Shewana3_1464	0.42	-0.4
1,699,940	+		Shewana3_1464	0.43	+0.9
1,699,940	+		Shewana3_1464	0.43	+0.9
1,699,940	+		Shewana3_1464	0.43	-0.4
1,699,948	-		Shewana3_1464	0.43	-0.9
1,699,948	-		Shewana3_1464	0.43	+1.5
1,699,948	-		Shewana3_1464	0.43	+0.3
1,699,948	-		Shewana3_1464	0.43	-1.1
1,699,948	-		Shewana3_1464	0.43	-0.1
1,699,948	-		Shewana3_1464	0.43	-2.4
1,699,948	-		Shewana3_1464	0.43	+1.9
1,699,948	-		Shewana3_1464	0.43	+0.9
1,699,948	-		Shewana3_1464	0.43	+0.9
1,699,957	-		Shewana3_1464	0.43	-0.1
1,699,959	+		Shewana3_1464	0.43	+1.9
1,699,967	-		Shewana3_1464	0.43	+0.9
1,699,967	-		Shewana3_1464	0.43	+0.3
1,699,967	-		Shewana3_1464	0.43	-1.3
1,699,967	-		Shewana3_1464	0.43	-0.1
1,699,967	-		Shewana3_1464	0.43	+0.9
1,699,974	-		Shewana3_1464	0.43	-1.3
1,699,974	-		Shewana3_1464	0.43	+0.9
1,699,983	-		Shewana3_1464	0.44	+0.9
1,699,983	-		Shewana3_1464	0.44	-1.1
1,699,994	+		Shewana3_1464	0.44	+1.9
1,699,994	+		Shewana3_1464	0.44	+0.9
1,699,994	+		Shewana3_1464	0.44	+0.9
1,699,994	+		Shewana3_1464	0.44	-0.9
1,700,002	-		Shewana3_1464	0.44	-0.4
1,700,002	-		Shewana3_1464	0.44	+0.9
1,700,002	-		Shewana3_1464	0.44	-0.4
1,700,002	-		Shewana3_1464	0.44	+0.8
1,700,002	-		Shewana3_1464	0.44	-0.7
1,700,004	+		Shewana3_1464	0.44	+1.9
1,700,004	+		Shewana3_1464	0.44	+1.9
1,700,004	+		Shewana3_1464	0.44	-0.4
1,700,006	+				+1.9
1,700,006	+		Shewana3_1464	0.44	-1.5
1,700,012	-		Shewana3_1464	0.44	-0.7
1,700,012	-		Shewana3_1464	0.44	+0.9
1,700,088	+		Shewana3_1464	0.46	+1.9
1,700,088	+		Shewana3_1464	0.46	+1.9
1,700,091	-		Shewana3_1464	0.46	-0.9
1,700,094	-		Shewana3_1464	0.46	+1.9
1,700,096	-		Shewana3_1464	0.46	-0.9
1,700,096	-		Shewana3_1464	0.46	+0.3
1,700,101	-		Shewana3_1464	0.46	-1.1
1,700,114	+		Shewana3_1464	0.47	+0.9
1,700,142	+		Shewana3_1464	0.47	-0.1
1,700,260	-		Shewana3_1464	0.50	-0.4
1,700,266	+		Shewana3_1464	0.50	+0.9
1,700,266	+		Shewana3_1464	0.50	-0.4
1,700,266	+		Shewana3_1464	0.50	+0.6
1,700,268	-		Shewana3_1464	0.50	+0.3
1,700,274	-		Shewana3_1464	0.50	-1.1
1,700,365	+		Shewana3_1464	0.53	+0.3
1,700,389	-		Shewana3_1464	0.53	+0.9
1,700,389	-		Shewana3_1464	0.53	+0.9
1,700,410	+		Shewana3_1464	0.54	+0.9
1,700,427	+		Shewana3_1464	0.54	+0.3
1,700,534	-		Shewana3_1464	0.57	+0.3
1,700,534	-		Shewana3_1464	0.57	+0.3
1,700,546	-		Shewana3_1464	0.57	-1.1
1,700,547	-		Shewana3_1464	0.57	-0.3
1,700,547	-		Shewana3_1464	0.57	-0.1
1,700,547	-		Shewana3_1464	0.57	+0.3
1,700,572	+		Shewana3_1464	0.57	+0.9
1,700,657	-		Shewana3_1464	0.59	-0.1
1,700,697	+		Shewana3_1464	0.60	-0.5
1,700,794	+		Shewana3_1464	0.63	-0.4
1,700,797	-		Shewana3_1464	0.63	+1.9
1,700,818	+		Shewana3_1464	0.63	-3.2
1,700,825	-		Shewana3_1464	0.63	-1.4
1,700,826	-		Shewana3_1464	0.63	-0.4
1,700,898	-		Shewana3_1464	0.65	+2.5
1,700,899	+		Shewana3_1464	0.65	+0.3
1,700,899	+		Shewana3_1464	0.65	+1.9
1,700,899	+		Shewana3_1464	0.65	+1.9
1,700,899	+		Shewana3_1464	0.65	+0.3
1,700,899	+		Shewana3_1464	0.65	+0.3
1,700,907	-		Shewana3_1464	0.65	+0.9
1,700,907	-		Shewana3_1464	0.65	-0.7
1,700,907	-		Shewana3_1464	0.65	-0.4
1,700,907	-		Shewana3_1464	0.65	+0.9
1,700,968	+		Shewana3_1464	0.67	-0.1
1,701,018	-		Shewana3_1464	0.68	-0.7
1,701,018	-		Shewana3_1464	0.68	+0.3
1,701,089	-		Shewana3_1464	0.69	+1.9
1,701,172	+		Shewana3_1464	0.71	+1.9
1,701,186	-		Shewana3_1464	0.72	+0.3
1,701,195	-		Shewana3_1464	0.72	-0.4
1,701,197	-		Shewana3_1464	0.72	+0.9
1,701,204	-		Shewana3_1464	0.72	-0.7
1,701,266	+		Shewana3_1464	0.74	+1.9
1,701,346	+		Shewana3_1464	0.75	+0.9
1,701,367	-		Shewana3_1464	0.76	+0.3
1,701,399	+		Shewana3_1464	0.77	-0.3
1,701,404	+		Shewana3_1464	0.77	+1.9
1,701,412	-		Shewana3_1464	0.77	-1.8
1,701,412	-		Shewana3_1464	0.77	+0.3
1,701,423	-		Shewana3_1464	0.77	-0.4
1,701,483	-		Shewana3_1464	0.79	-0.4
1,701,521	+		Shewana3_1464	0.79	+0.9
1,701,529	-		Shewana3_1464	0.80	+0.3
1,701,529	-		Shewana3_1464	0.80	-0.8
1,701,534	-		Shewana3_1464	0.80	-0.7
1,701,542	+		Shewana3_1464	0.80	-1.7
1,701,594	-		Shewana3_1464	0.81	+0.3
1,701,702	+		Shewana3_1464	0.84	+1.9
1,701,702	+		Shewana3_1464	0.84	+1.9
1,701,856	-		Shewana3_1464	0.87	+0.9
1,701,929	-		Shewana3_1464	0.89	-0.9
1,701,959	+		Shewana3_1464	0.90	+1.9
1,701,959	+		Shewana3_1464	0.90	+0.9
1,701,980	-				-0.1
1,701,982	-				+0.9
1,702,026	-				+0.3
1,702,032	-				-1.3
1,702,040	+				+1.9
1,702,040	+				+0.9
1,702,093	-				-1.4
1,702,096	+				-0.1
1,702,096	+				+0.9
1,702,096	+				-0.4
1,702,101	+				-0.1
1,702,104	-				+1.3
1,702,114	-				-1.8
1,702,123	-				-1.5
1,702,149	+				+0.3
1,702,157	-				-2.0
1,702,157	-				-0.7
1,702,157	-				-0.9
1,702,170	-				+1.6
1,702,172	+				-0.8
1,702,180	-				-1.3
1,702,200	-				+0.7
1,702,208	-				-0.1
1,702,210	-				-0.5
1,702,221	+				-2.5
1,702,221	+				+2.9
1,702,229	-				+0.3
1,702,284	-				+0.9
1,702,373	+				+1.9
1,702,378	+				+0.0
1,702,381	-				-1.1
1,702,381	-				-1.1
1,702,381	-				+0.9
1,702,745	+				-0.3
1,702,753	-				-0.7
1,702,819	+				-0.9
1,702,827	-				+0.9
1,702,908	-				-2.6
1,702,920	-				-2.1
1,702,966	+		Shewana3_1465	0.11	-0.1
1,702,999	+		Shewana3_1465	0.12	-1.3
1,703,051	+		Shewana3_1465	0.14	-0.6
1,703,128	-				+1.9
1,703,138	+		Shewana3_1465	0.17	-0.6
1,703,175	+		Shewana3_1465	0.19	+0.3
1,703,264	+		Shewana3_1465	0.22	+0.5
1,703,272	-		Shewana3_1465	0.22	-0.9
1,703,286	+		Shewana3_1465	0.23	+0.3
1,703,335	+		Shewana3_1465	0.24	-1.3
1,703,390	+		Shewana3_1465	0.26	-0.2