Experiment: Chloramphenicol 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1308 and Shewana3_1309 are separated by 5 nucleotides Shewana3_1309 and Shewana3_1310 are separated by 36 nucleotides Shewana3_1310 and Shewana3_1311 overlap by 4 nucleotides
Shewana3_1308: Shewana3_1308 - GCN5-related N-acetyltransferase (RefSeq), at 1,522,536 to 1,524,113
_1308
Shewana3_1309: Shewana3_1309 - acylneuraminate cytidylyltransferase (RefSeq), at 1,524,119 to 1,524,835
_1309
Shewana3_1310: Shewana3_1310 - hypothetical protein (RefSeq), at 1,524,872 to 1,525,150
_1310
Shewana3_1311: Shewana3_1311 - hypothetical protein (RefSeq), at 1,525,147 to 1,526,442
_1311
Position (kb)
1524
1525
1526 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1523.884 kb on + strand, within Shewana3_1308 at 1523.904 kb on + strand, within Shewana3_1308 at 1524.006 kb on - strand at 1524.016 kb on - strand at 1524.162 kb on + strand at 1524.201 kb on + strand, within Shewana3_1309 at 1524.338 kb on - strand, within Shewana3_1309 at 1524.338 kb on - strand, within Shewana3_1309 at 1524.493 kb on - strand, within Shewana3_1309 at 1524.653 kb on + strand, within Shewana3_1309 at 1524.853 kb on - strand at 1524.959 kb on - strand, within Shewana3_1310 at 1525.039 kb on - strand, within Shewana3_1310 at 1525.101 kb on + strand, within Shewana3_1310 at 1525.326 kb on + strand, within Shewana3_1311 at 1525.336 kb on - strand, within Shewana3_1311 at 1525.463 kb on - strand, within Shewana3_1311 at 1525.538 kb on + strand, within Shewana3_1311 at 1525.575 kb on + strand, within Shewana3_1311 at 1525.665 kb on - strand, within Shewana3_1311 at 1525.718 kb on + strand, within Shewana3_1311 at 1525.719 kb on - strand, within Shewana3_1311 at 1525.804 kb on - strand, within Shewana3_1311 at 1525.924 kb on - strand, within Shewana3_1311 at 1525.991 kb on + strand, within Shewana3_1311 at 1526.021 kb on + strand, within Shewana3_1311 at 1526.029 kb on - strand, within Shewana3_1311 at 1526.097 kb on + strand, within Shewana3_1311 at 1526.110 kb on - strand, within Shewana3_1311
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0001 mg/ml remove 1,523,884 + Shewana3_1308 0.85 -1.8 1,523,904 + Shewana3_1308 0.87 +1.8 1,524,006 - +0.1 1,524,016 - +0.8 1,524,162 + -1.3 1,524,201 + Shewana3_1309 0.11 +0.4 1,524,338 - Shewana3_1309 0.31 -0.6 1,524,338 - Shewana3_1309 0.31 +0.6 1,524,493 - Shewana3_1309 0.52 -0.2 1,524,653 + Shewana3_1309 0.74 -1.7 1,524,853 - +0.2 1,524,959 - Shewana3_1310 0.31 -0.8 1,525,039 - Shewana3_1310 0.60 -0.6 1,525,101 + Shewana3_1310 0.82 -2.3 1,525,326 + Shewana3_1311 0.14 -0.3 1,525,336 - Shewana3_1311 0.15 -1.2 1,525,463 - Shewana3_1311 0.24 +0.4 1,525,538 + Shewana3_1311 0.30 -1.1 1,525,575 + Shewana3_1311 0.33 -1.7 1,525,665 - Shewana3_1311 0.40 -0.6 1,525,718 + Shewana3_1311 0.44 -1.9 1,525,719 - Shewana3_1311 0.44 +0.1 1,525,804 - Shewana3_1311 0.51 +0.0 1,525,924 - Shewana3_1311 0.60 +0.8 1,525,991 + Shewana3_1311 0.65 -1.7 1,526,021 + Shewana3_1311 0.67 -0.1 1,526,029 - Shewana3_1311 0.68 -0.6 1,526,097 + Shewana3_1311 0.73 -0.8 1,526,110 - Shewana3_1311 0.74 +0.0
Or see this region's nucleotide sequence