Experiment: Chloramphenicol 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1263 and Shewana3_1264 are separated by 286 nucleotides Shewana3_1264 and Shewana3_1265 overlap by 4 nucleotides Shewana3_1265 and Shewana3_1266 overlap by 4 nucleotides Shewana3_1266 and Shewana3_1267 overlap by 4 nucleotides
Shewana3_1263: Shewana3_1263 - putative replication initiator and transcription repressor protein (RefSeq), at 1,477,522 to 1,478,379
_1263
Shewana3_1264: Shewana3_1264 - cobyrinic acid a,c-diamide synthase (RefSeq), at 1,478,666 to 1,479,304
_1264
Shewana3_1265: Shewana3_1265 - hypothetical protein (RefSeq), at 1,479,301 to 1,479,552
_1265
Shewana3_1266: Shewana3_1266 - hypothetical protein (RefSeq), at 1,479,549 to 1,480,082
_1266
Shewana3_1267: Shewana3_1267 - TraF peptidase (RefSeq), at 1,480,079 to 1,480,666
_1267
Position (kb)
1478
1479
1480 Strain fitness (log2 ratio)
-1
0
1 at 1477.673 kb on + strand, within Shewana3_1263 at 1478.044 kb on - strand, within Shewana3_1263 at 1478.132 kb on + strand, within Shewana3_1263 at 1478.132 kb on + strand, within Shewana3_1263 at 1478.150 kb on + strand, within Shewana3_1263 at 1478.204 kb on - strand, within Shewana3_1263 at 1478.294 kb on - strand at 1478.305 kb on - strand at 1478.592 kb on + strand at 1478.593 kb on - strand at 1478.649 kb on + strand at 1478.736 kb on + strand, within Shewana3_1264 at 1478.807 kb on - strand, within Shewana3_1264 at 1478.833 kb on - strand, within Shewana3_1264 at 1478.847 kb on - strand, within Shewana3_1264 at 1478.847 kb on - strand, within Shewana3_1264 at 1478.847 kb on - strand, within Shewana3_1264 at 1478.852 kb on + strand, within Shewana3_1264 at 1478.996 kb on - strand, within Shewana3_1264 at 1479.043 kb on - strand, within Shewana3_1264 at 1479.105 kb on + strand, within Shewana3_1264 at 1479.164 kb on - strand, within Shewana3_1264 at 1479.274 kb on + strand at 1479.274 kb on + strand at 1479.366 kb on + strand, within Shewana3_1265 at 1479.411 kb on + strand, within Shewana3_1265 at 1479.548 kb on - strand at 1479.554 kb on + strand at 1479.740 kb on - strand, within Shewana3_1266 at 1479.838 kb on + strand, within Shewana3_1266 at 1479.861 kb on - strand, within Shewana3_1266 at 1479.952 kb on + strand, within Shewana3_1266 at 1479.960 kb on - strand, within Shewana3_1266 at 1479.960 kb on - strand, within Shewana3_1266 at 1480.005 kb on - strand, within Shewana3_1266 at 1480.094 kb on + strand at 1480.209 kb on - strand, within Shewana3_1267 at 1480.226 kb on + strand, within Shewana3_1267 at 1480.234 kb on - strand, within Shewana3_1267 at 1480.281 kb on - strand, within Shewana3_1267 at 1480.289 kb on + strand, within Shewana3_1267
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0001 mg/ml remove 1,477,673 + Shewana3_1263 0.18 +0.8 1,478,044 - Shewana3_1263 0.61 -0.2 1,478,132 + Shewana3_1263 0.71 -0.1 1,478,132 + Shewana3_1263 0.71 -0.2 1,478,150 + Shewana3_1263 0.73 +0.1 1,478,204 - Shewana3_1263 0.79 +0.3 1,478,294 - +0.9 1,478,305 - -0.0 1,478,592 + -0.5 1,478,593 - +0.4 1,478,649 + -0.3 1,478,736 + Shewana3_1264 0.11 +0.3 1,478,807 - Shewana3_1264 0.22 -0.2 1,478,833 - Shewana3_1264 0.26 +1.0 1,478,847 - Shewana3_1264 0.28 -0.3 1,478,847 - Shewana3_1264 0.28 +0.3 1,478,847 - Shewana3_1264 0.28 -0.4 1,478,852 + Shewana3_1264 0.29 +0.0 1,478,996 - Shewana3_1264 0.52 +0.1 1,479,043 - Shewana3_1264 0.59 +0.0 1,479,105 + Shewana3_1264 0.69 +0.7 1,479,164 - Shewana3_1264 0.78 -0.0 1,479,274 + -1.3 1,479,274 + -0.3 1,479,366 + Shewana3_1265 0.26 -0.6 1,479,411 + Shewana3_1265 0.44 -1.0 1,479,548 - -0.8 1,479,554 + -0.9 1,479,740 - Shewana3_1266 0.36 +0.5 1,479,838 + Shewana3_1266 0.54 -0.6 1,479,861 - Shewana3_1266 0.58 +0.6 1,479,952 + Shewana3_1266 0.75 -0.1 1,479,960 - Shewana3_1266 0.77 -0.9 1,479,960 - Shewana3_1266 0.77 +0.0 1,480,005 - Shewana3_1266 0.85 -0.3 1,480,094 + -0.6 1,480,209 - Shewana3_1267 0.22 +0.7 1,480,226 + Shewana3_1267 0.25 -0.4 1,480,234 - Shewana3_1267 0.26 -0.6 1,480,281 - Shewana3_1267 0.34 +0.2 1,480,289 + Shewana3_1267 0.36 +0.3
Or see this region's nucleotide sequence