Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1148

Experiment: Chloramphenicol 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1146 and Shewana3_1147 are separated by 99 nucleotidesShewana3_1147 and Shewana3_1148 overlap by 4 nucleotidesShewana3_1148 and Shewana3_1149 are separated by 1 nucleotidesShewana3_1149 and Shewana3_1150 are separated by 423 nucleotides Shewana3_1146: Shewana3_1146 - OsmC family protein (RefSeq), at 1,353,330 to 1,353,767 _1146 Shewana3_1147: Shewana3_1147 - hypothetical protein (RefSeq), at 1,353,867 to 1,354,217 _1147 Shewana3_1148: Shewana3_1148 - PepSY-associated TM helix domain-containing protein (RefSeq), at 1,354,214 to 1,355,896 _1148 Shewana3_1149: Shewana3_1149 - hypothetical protein (RefSeq), at 1,355,898 to 1,356,266 _1149 Shewana3_1150: Shewana3_1150 - methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor (RefSeq), at 1,356,690 to 1,358,258 _1150 Position (kb) 1354 1355 1356Strain fitness (log2 ratio) -1 0 1 2at 1353.509 kb on + strand, within Shewana3_1146at 1353.581 kb on - strand, within Shewana3_1146at 1353.797 kb on - strandat 1353.841 kb on + strandat 1353.892 kb on + strandat 1353.897 kb on + strandat 1354.022 kb on - strand, within Shewana3_1147at 1354.165 kb on - strand, within Shewana3_1147at 1354.229 kb on + strandat 1354.410 kb on - strand, within Shewana3_1148at 1354.570 kb on + strand, within Shewana3_1148at 1354.578 kb on - strand, within Shewana3_1148at 1354.880 kb on - strand, within Shewana3_1148at 1354.972 kb on + strand, within Shewana3_1148at 1355.336 kb on + strand, within Shewana3_1148at 1355.339 kb on - strand, within Shewana3_1148at 1355.339 kb on - strand, within Shewana3_1148at 1355.675 kb on - strand, within Shewana3_1148at 1355.687 kb on + strand, within Shewana3_1148at 1355.695 kb on - strand, within Shewana3_1148at 1355.774 kb on - strandat 1355.911 kb on + strandat 1355.911 kb on + strandat 1355.912 kb on + strandat 1355.919 kb on - strandat 1355.919 kb on - strandat 1355.919 kb on - strandat 1355.929 kb on - strandat 1355.953 kb on - strand, within Shewana3_1149at 1356.165 kb on - strand, within Shewana3_1149at 1356.345 kb on - strandat 1356.791 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloramphenicol 0.0001 mg/ml
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1,353,509 + Shewana3_1146 0.41 -0.8
1,353,581 - Shewana3_1146 0.57 +0.5
1,353,797 - -1.4
1,353,841 + +0.8
1,353,892 + +0.8
1,353,897 + +1.8
1,354,022 - Shewana3_1147 0.44 +1.1
1,354,165 - Shewana3_1147 0.85 +1.0
1,354,229 + +1.8
1,354,410 - Shewana3_1148 0.12 +0.8
1,354,570 + Shewana3_1148 0.21 +0.8
1,354,578 - Shewana3_1148 0.22 +1.1
1,354,880 - Shewana3_1148 0.40 +1.0
1,354,972 + Shewana3_1148 0.45 -0.7
1,355,336 + Shewana3_1148 0.67 +0.8
1,355,339 - Shewana3_1148 0.67 +0.6
1,355,339 - Shewana3_1148 0.67 +0.1
1,355,675 - Shewana3_1148 0.87 +0.7
1,355,687 + Shewana3_1148 0.88 +0.2
1,355,695 - Shewana3_1148 0.88 +0.6
1,355,774 - +0.0
1,355,911 + -0.8
1,355,911 + -1.3
1,355,912 + -0.5
1,355,919 - +0.5
1,355,919 - +1.6
1,355,919 - -1.0
1,355,929 - -0.5
1,355,953 - Shewana3_1149 0.15 +1.3
1,356,165 - Shewana3_1149 0.72 +1.0
1,356,345 - -0.8
1,356,791 - -0.8

Or see this region's nucleotide sequence