Experiment: Chloramphenicol 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1070 and Shewana3_1071 are separated by 8 nucleotides Shewana3_1071 and Shewana3_1072 are separated by 187 nucleotides Shewana3_1072 and Shewana3_1073 are separated by 116 nucleotides
Shewana3_1070: Shewana3_1070 - diguanylate cyclase/phosphodiesterase (RefSeq), at 1,255,491 to 1,257,017
_1070
Shewana3_1071: Shewana3_1071 - thioesterase superfamily protein (RefSeq), at 1,257,026 to 1,257,439
_1071
Shewana3_1072: Shewana3_1072 - adenylosuccinate synthetase (RefSeq), at 1,257,627 to 1,258,883
_1072
Shewana3_1073: Shewana3_1073 - LysR family transcriptional regulator (RefSeq), at 1,259,000 to 1,259,908
_1073
Position (kb)
1257
1258
1259 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1256.646 kb on - strand, within Shewana3_1070 at 1256.646 kb on - strand, within Shewana3_1070 at 1256.656 kb on - strand, within Shewana3_1070 at 1256.833 kb on + strand, within Shewana3_1070 at 1256.888 kb on - strand at 1256.946 kb on - strand at 1257.039 kb on - strand at 1257.194 kb on - strand, within Shewana3_1071 at 1257.224 kb on + strand, within Shewana3_1071 at 1257.475 kb on + strand at 1257.559 kb on - strand at 1257.626 kb on - strand at 1257.626 kb on - strand at 1257.656 kb on - strand at 1257.937 kb on - strand, within Shewana3_1072 at 1258.074 kb on + strand, within Shewana3_1072 at 1258.094 kb on - strand, within Shewana3_1072 at 1258.126 kb on + strand, within Shewana3_1072 at 1258.139 kb on - strand, within Shewana3_1072 at 1258.171 kb on + strand, within Shewana3_1072 at 1258.194 kb on - strand, within Shewana3_1072 at 1258.518 kb on - strand, within Shewana3_1072 at 1258.575 kb on - strand, within Shewana3_1072 at 1258.575 kb on - strand, within Shewana3_1072 at 1258.580 kb on - strand, within Shewana3_1072 at 1258.587 kb on - strand, within Shewana3_1072 at 1258.609 kb on - strand, within Shewana3_1072 at 1258.914 kb on + strand at 1259.092 kb on + strand, within Shewana3_1073 at 1259.112 kb on - strand, within Shewana3_1073 at 1259.285 kb on + strand, within Shewana3_1073 at 1259.383 kb on + strand, within Shewana3_1073 at 1259.391 kb on - strand, within Shewana3_1073 at 1259.495 kb on - strand, within Shewana3_1073 at 1259.778 kb on - strand, within Shewana3_1073 at 1259.820 kb on - strand at 1259.866 kb on + strand at 1259.869 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0001 mg/ml remove 1,256,646 - Shewana3_1070 0.76 -2.2 1,256,646 - Shewana3_1070 0.76 +1.6 1,256,656 - Shewana3_1070 0.76 -0.6 1,256,833 + Shewana3_1070 0.88 +0.2 1,256,888 - -3.2 1,256,946 - -0.7 1,257,039 - +0.8 1,257,194 - Shewana3_1071 0.41 +0.7 1,257,224 + Shewana3_1071 0.48 +0.3 1,257,475 + -0.1 1,257,559 - -0.2 1,257,626 - +1.2 1,257,626 - +0.8 1,257,656 - +1.0 1,257,937 - Shewana3_1072 0.25 +1.0 1,258,074 + Shewana3_1072 0.36 -0.5 1,258,094 - Shewana3_1072 0.37 +0.9 1,258,126 + Shewana3_1072 0.40 -1.0 1,258,139 - Shewana3_1072 0.41 +1.2 1,258,171 + Shewana3_1072 0.43 -2.0 1,258,194 - Shewana3_1072 0.45 +0.9 1,258,518 - Shewana3_1072 0.71 +0.2 1,258,575 - Shewana3_1072 0.75 +0.7 1,258,575 - Shewana3_1072 0.75 +0.5 1,258,580 - Shewana3_1072 0.76 +0.8 1,258,587 - Shewana3_1072 0.76 +0.8 1,258,609 - Shewana3_1072 0.78 +0.5 1,258,914 + -0.1 1,259,092 + Shewana3_1073 0.10 -0.2 1,259,112 - Shewana3_1073 0.12 -0.5 1,259,285 + Shewana3_1073 0.31 +1.6 1,259,383 + Shewana3_1073 0.42 -0.7 1,259,391 - Shewana3_1073 0.43 +0.4 1,259,495 - Shewana3_1073 0.54 +0.8 1,259,778 - Shewana3_1073 0.86 -1.2 1,259,820 - -0.2 1,259,866 + +0.3 1,259,869 - -0.5
Or see this region's nucleotide sequence