Experiment: Chloramphenicol 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1049 and Shewana3_1050 are separated by 85 nucleotides Shewana3_1050 and Shewana3_1051 are separated by 179 nucleotides Shewana3_1051 and Shewana3_1052 are separated by 51 nucleotides
Shewana3_1049: Shewana3_1049 - DNA repair protein RadA (RefSeq), at 1,228,303 to 1,229,667
_1049
Shewana3_1050: Shewana3_1050 - type IV pilus assembly PilZ (RefSeq), at 1,229,753 to 1,230,145
_1050
Shewana3_1051: Shewana3_1051 - DNA-binding transcriptional regulator TorR (RefSeq), at 1,230,325 to 1,231,035
_1051
Shewana3_1052: Shewana3_1052 - TMAO reductase system periplasmic protein TorT (RefSeq), at 1,231,087 to 1,232,154
_1052
Position (kb)
1230
1231
1232 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1229.421 kb on - strand, within Shewana3_1049 at 1229.471 kb on + strand, within Shewana3_1049 at 1229.471 kb on + strand, within Shewana3_1049 at 1229.527 kb on + strand, within Shewana3_1049 at 1229.961 kb on - strand, within Shewana3_1050 at 1230.228 kb on + strand at 1230.233 kb on + strand at 1230.316 kb on + strand at 1230.335 kb on - strand at 1230.335 kb on - strand at 1230.400 kb on + strand, within Shewana3_1051 at 1230.482 kb on + strand, within Shewana3_1051 at 1230.631 kb on - strand, within Shewana3_1051 at 1230.757 kb on - strand, within Shewana3_1051 at 1230.769 kb on + strand, within Shewana3_1051 at 1230.779 kb on + strand, within Shewana3_1051 at 1230.787 kb on - strand, within Shewana3_1051 at 1231.085 kb on + strand at 1231.176 kb on + strand at 1231.351 kb on - strand, within Shewana3_1052 at 1231.351 kb on - strand, within Shewana3_1052 at 1231.444 kb on - strand, within Shewana3_1052 at 1231.444 kb on - strand, within Shewana3_1052 at 1231.480 kb on + strand, within Shewana3_1052 at 1231.706 kb on + strand, within Shewana3_1052 at 1231.876 kb on - strand, within Shewana3_1052 at 1231.917 kb on + strand, within Shewana3_1052 at 1231.932 kb on - strand, within Shewana3_1052
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0001 mg/ml remove 1,229,421 - Shewana3_1049 0.82 -0.6 1,229,471 + Shewana3_1049 0.86 -0.2 1,229,471 + Shewana3_1049 0.86 -0.2 1,229,527 + Shewana3_1049 0.90 -0.3 1,229,961 - Shewana3_1050 0.53 +0.5 1,230,228 + -0.0 1,230,233 + +0.1 1,230,316 + -0.8 1,230,335 - -1.6 1,230,335 - -0.5 1,230,400 + Shewana3_1051 0.11 -0.6 1,230,482 + Shewana3_1051 0.22 -0.3 1,230,631 - Shewana3_1051 0.43 -0.1 1,230,757 - Shewana3_1051 0.61 +1.9 1,230,769 + Shewana3_1051 0.62 -2.0 1,230,779 + Shewana3_1051 0.64 -1.4 1,230,787 - Shewana3_1051 0.65 +0.5 1,231,085 + -0.3 1,231,176 + +0.4 1,231,351 - Shewana3_1052 0.25 -1.2 1,231,351 - Shewana3_1052 0.25 -1.3 1,231,444 - Shewana3_1052 0.33 +0.4 1,231,444 - Shewana3_1052 0.33 -0.7 1,231,480 + Shewana3_1052 0.37 -0.2 1,231,706 + Shewana3_1052 0.58 +0.3 1,231,876 - Shewana3_1052 0.74 +0.3 1,231,917 + Shewana3_1052 0.78 -1.2 1,231,932 - Shewana3_1052 0.79 -0.3
Or see this region's nucleotide sequence